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2024-05-19 10:59:58
Summary for Dictyostelium fasciculatum, SH3.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
Free access

 

 Dictyostelium fasciculatum, SH3
Genomic elements25 segment(s)
Hide details
 
Dfasci-F-a-11f03.f1-5
length: 911335 bp
gc-content (intragenic): 0.36593 %

 
CDS:
332 genes, length ø 1813 bp, gc-content ø 0.365
 
'+'-strand:
174 genes, length ø 1680 bp, gc-content ø 0.365
 
'-'-strand:
158 genes, length ø 1960 bp, gc-content ø 0.366
 
tRNA:
1 genes, length ø 72 bp, gc-content ø 0.458
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-F-a-25c12.r2-5
length: 4166812 bp
gc-content (intragenic): 0.372468 %

 
CDS:
1639 genes, length ø 1649 bp, gc-content ø 0.369
 
'+'-strand:
795 genes, length ø 1682 bp, gc-content ø 0.37
 
'-'-strand:
844 genes, length ø 1619 bp, gc-content ø 0.369
 
tRNA:
28 genes, length ø 75 bp, gc-content ø 0.52
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-b-126g04.f1-5
length: 499581 bp
gc-content (intragenic): 0.365175 %

 
CDS:
185 genes, length ø 1791 bp, gc-content ø 0.363
 
'+'-strand:
83 genes, length ø 1909 bp, gc-content ø 0.366
 
'-'-strand:
102 genes, length ø 1696 bp, gc-content ø 0.36
 
tRNA:
2 genes, length ø 72 bp, gc-content ø 0.555
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-b-143d02.r1-5
length: 656888 bp
gc-content (intragenic): 0.362684 %

 
CDS:
258 genes, length ø 1764 bp, gc-content ø 0.358
 
'+'-strand:
134 genes, length ø 1637 bp, gc-content ø 0.356
 
'-'-strand:
124 genes, length ø 1900 bp, gc-content ø 0.361
 
tRNA:
6 genes, length ø 77 bp, gc-content ø 0.533
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-b-190b03.r1-5
length: 548609 bp
gc-content (intragenic): 0.372024 %

 
CDS:
231 genes, length ø 1559 bp, gc-content ø 0.371
 
'+'-strand:
126 genes, length ø 1579 bp, gc-content ø 0.369
 
'-'-strand:
105 genes, length ø 1535 bp, gc-content ø 0.373
 
tRNA:
1 genes, length ø 81 bp, gc-content ø 0.506
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-b-205a01.r1-3
length: 2485436 bp
gc-content (intragenic): 0.376051 %

 
CDS:
908 genes, length ø 1782 bp, gc-content ø 0.375
 
'+'-strand:
443 genes, length ø 1711 bp, gc-content ø 0.375
 
'-'-strand:
465 genes, length ø 1851 bp, gc-content ø 0.374
 
tRNA:
6 genes, length ø 75 bp, gc-content ø 0.529
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-b-285a01.f1-5
length: 1327167 bp
gc-content (intragenic): 0.364701 %

 
CDS:
509 genes, length ø 1630 bp, gc-content ø 0.362
 
'+'-strand:
242 genes, length ø 1700 bp, gc-content ø 0.359
 
'-'-strand:
267 genes, length ø 1566 bp, gc-content ø 0.365
 
tRNA:
8 genes, length ø 77 bp, gc-content ø 0.493
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-o-01g03.f1-3
length: 6278 bp
gc-content (intragenic): 0.235528 %

 
CDS:
2 genes, length ø 1362 bp, gc-content ø 0.235
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
2 genes, length ø 1362 bp, gc-content ø 0.235
 

 
Dfasci-G-o-31e06.f1-3
length: 20409 bp
gc-content (intragenic): 0.341811 %

 
CDS:
5 genes, length ø 2146 bp, gc-content ø 0.341
 
'+'-strand:
2 genes, length ø 3936 bp, gc-content ø 0.325
 
'-'-strand:
3 genes, length ø 953 bp, gc-content ø 0.352
 

 
Dfasci-G-o-33e01.r1-3
length: 1429294 bp
gc-content (intragenic): 0.369705 %

 
CDS:
571 genes, length ø 1596 bp, gc-content ø 0.366
 
'+'-strand:
290 genes, length ø 1585 bp, gc-content ø 0.367
 
'-'-strand:
281 genes, length ø 1607 bp, gc-content ø 0.366
 
tRNA:
12 genes, length ø 72 bp, gc-content ø 0.509
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-o-80e12.f1-5
length: 2750815 bp
gc-content (intragenic): 0.373089 %

 
CDS:
1040 genes, length ø 1703 bp, gc-content ø 0.372
 
'+'-strand:
528 genes, length ø 1751 bp, gc-content ø 0.371
 
'-'-strand:
512 genes, length ø 1653 bp, gc-content ø 0.372
 
tRNA:
5 genes, length ø 81 bp, gc-content ø 0.533
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-p-12c09.r1-3
length: 1770755 bp
gc-content (intragenic): 0.376978 %

 
CDS:
684 genes, length ø 1689 bp, gc-content ø 0.373
 
'+'-strand:
343 genes, length ø 1667 bp, gc-content ø 0.373
 
'-'-strand:
341 genes, length ø 1710 bp, gc-content ø 0.373
 
tRNA:
15 genes, length ø 73 bp, gc-content ø 0.549
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Dfasci-G-p-24b12.r1-5
length: 5258 bp
gc-content (intragenic): 0.384108 %

 
CDS:
2 genes, length ø 926 bp, gc-content ø 0.384
 
'+'-strand:
1 genes, length ø 1511 bp, gc-content ø 0.385
 
'-'-strand:
1 genes, length ø 342 bp, gc-content ø 0.383
 

 
EJPB12P01AWP9W-5
length: 629417 bp
gc-content (intragenic): 0.365411 %

 
CDS:
215 genes, length ø 1882 bp, gc-content ø 0.364
 
'+'-strand:
126 genes, length ø 1761 bp, gc-content ø 0.366
 
'-'-strand:
89 genes, length ø 2054 bp, gc-content ø 0.361
 
tRNA:
1 genes, length ø 72 bp, gc-content ø 0.486
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ET2XIPL01CNAVH-3
length: 1908399 bp
gc-content (intragenic): 0.371068 %

 
CDS:
737 genes, length ø 1715 bp, gc-content ø 0.366
 
'+'-strand:
365 genes, length ø 1748 bp, gc-content ø 0.366
 
'-'-strand:
372 genes, length ø 1683 bp, gc-content ø 0.366
 
tRNA:
24 genes, length ø 75 bp, gc-content ø 0.513
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ET2XIPL01COFD4-5
length: 3468650 bp
gc-content (intragenic): 0.371259 %

 
CDS:
1318 genes, length ø 1723 bp, gc-content ø 0.368
 
'+'-strand:
692 genes, length ø 1740 bp, gc-content ø 0.367
 
'-'-strand:
626 genes, length ø 1704 bp, gc-content ø 0.369
 
tRNA:
23 genes, length ø 74 bp, gc-content ø 0.54
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ETN8J6Q01D5IKE-5
length: 5990 bp
gc-content (intragenic): 0.331993 %

 
CDS:
2 genes, length ø 1234 bp, gc-content ø 0.331
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
2 genes, length ø 1234 bp, gc-content ø 0.331
 

 
EU5ZYIE01BBABR-5
length: 470708 bp
gc-content (intragenic): 0.372454 %

 
CDS:
193 genes, length ø 1572 bp, gc-content ø 0.365
 
'+'-strand:
100 genes, length ø 1534 bp, gc-content ø 0.366
 
'-'-strand:
93 genes, length ø 1612 bp, gc-content ø 0.364
 
tRNA:
9 genes, length ø 73 bp, gc-content ø 0.518
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EU5ZYIE01DZOHE-5
length: 761004 bp
gc-content (intragenic): 0.378493 %

 
CDS:
287 genes, length ø 1746 bp, gc-content ø 0.373
 
'+'-strand:
154 genes, length ø 1808 bp, gc-content ø 0.372
 
'-'-strand:
133 genes, length ø 1674 bp, gc-content ø 0.373
 
tRNA:
10 genes, length ø 77 bp, gc-content ø 0.536
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EU5ZYIE01EUG8B-5
length: 941765 bp
gc-content (intragenic): 0.369216 %

 
CDS:
319 genes, length ø 1943 bp, gc-content ø 0.366
 
'+'-strand:
153 genes, length ø 1958 bp, gc-content ø 0.367
 
'-'-strand:
166 genes, length ø 1929 bp, gc-content ø 0.365
 
tRNA:
5 genes, length ø 72 bp, gc-content ø 0.549
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EU5ZYIE02H8LDV-5
length: 1919465 bp
gc-content (intragenic): 0.370031 %

 
CDS:
783 genes, length ø 1569 bp, gc-content ø 0.365
 
'+'-strand:
382 genes, length ø 1580 bp, gc-content ø 0.367
 
'-'-strand:
401 genes, length ø 1559 bp, gc-content ø 0.363
 
tRNA:
22 genes, length ø 73 bp, gc-content ø 0.533
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EUAJFUG01CK1KI-5
length: 542435 bp
gc-content (intragenic): 0.358313 %

 
CDS:
209 genes, length ø 1694 bp, gc-content ø 0.358
 
'+'-strand:
106 genes, length ø 1710 bp, gc-content ø 0.356
 
'-'-strand:
103 genes, length ø 1677 bp, gc-content ø 0.359
 
tRNA:
1 genes, length ø 85 bp, gc-content ø 0.423
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EUAJFUG02G6ADK-5
length: 378254 bp
gc-content (intragenic): 0.376433 %

 
CDS:
163 genes, length ø 1503 bp, gc-content ø 0.374
 
'+'-strand:
76 genes, length ø 1443 bp, gc-content ø 0.38
 
'-'-strand:
87 genes, length ø 1555 bp, gc-content ø 0.369
 
tRNA:
2 genes, length ø 73 bp, gc-content ø 0.534
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
EUAJFUG02HR96I-5
length: 3408800 bp
gc-content (intragenic): 0.373983 %

 
CDS:
1282 genes, length ø 1709 bp, gc-content ø 0.372
 
'+'-strand:
625 genes, length ø 1657 bp, gc-content ø 0.372
 
'-'-strand:
657 genes, length ø 1759 bp, gc-content ø 0.372
 
tRNA:
17 genes, length ø 74 bp, gc-content ø 0.509
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
contig10036_1.exp-5
length: 5784 bp
gc-content (intragenic): 0.314994 %

 
CDS:
5 genes, length ø 656 bp, gc-content ø 0.314
 
'+'-strand:
1 genes, length ø 333 bp, gc-content ø 0.315
 
'-'-strand:
4 genes, length ø 737 bp, gc-content ø 0.314
 

 
Genome featuresCDS:
11879 genes, length ø 1695 bp, gc-content ø 0.368
 
'+'-strand:
5941 genes, length ø 1695 bp, gc-content ø 0.369
 
'-'-strand:
5938 genes, length ø 1696 bp, gc-content ø 0.368
 
tRNA:
198 genes, length ø 74 bp, gc-content ø 0.524
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]198
Carbohydrate transport and metabolism [G]179
Cell cycle control, mitosis and meiosis [D]213
Cell motility [N]20
Cell wall/membrane biogenesis [M]88
Chromatin structure and dynamics [B]53
Coenzyme transport and metabolism [H]110
Cytoskeleton [Z]118
Defense mechanisms [V]68
Energy production and conversion [C]172
Extracellular structures [W]4
Function unknown [S]186
General function prediction only [R]1147
Inorganic ion transport and metabolism [P]121
Intracellular trafficking and secretion [U]119
Lipid transport and metabolism [I]191
NOT ANALYZED198
Nuclear structure [Y]6
Nucleotide transport and metabolism [F]79
Posttranslational modification, protein turnover, chaperones [O]389
RNA processing and modification [A]35
Replication, recombination and repair [L]493
Secondary metabolites biosynthesis, transport and catabolism [Q]160
Signal transduction mechanisms [T]397
Transcription [K]427
Translation, ribosomal structure and biogenesis [J]375
Unclassified [-]7797