General information | |
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Gene lists | |
Browse gene lists of selected genomes. | |
COG functional categories | |
Select genes of specific COG functional categories across genomes. | |
Genome plots | |
Generate linear plots. | |
(Clickable) linear whole genome views | |
Display a clickable linear view of all genes of a genomic element coloured according to the COG functional classification. | |
Genome lists | |
Generate genome lists of selected genomes. | |
Sequence retrieval | |
Retrieve genomic sequences or intergenic regions of selected genomic elements. | |
Search | |
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Advanced search | |
Search for organisms, genes, COGs and external database information (short output with gene name, locus tag, description, location, strand information. Comprehensive output with additional information on best-bidirectional protein hits in all SACGB genomes and UniProt and TrEMBL hits). | |
Sequence similarity search | |
Identify sequence similarities between any sequence stretches and all SACGB genomes. | |
Genome comparison | |
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Best bidirectional hits (protein-based analysis) | |
Generate a list of best bidirectional hits between the proteins of two genomes. | |
Gene core sets (protein-based analysis) | |
List all related genes of two or more genomes, genomic elements or user defined lists. | |
Protein variations (protein-based analysis) | |
List and analyse all best bidirectional protein hits. | |
Synteny analysis (protein-based analysis) | |
Analyse syntenies between different genomes based on the best bidirectional protein hits. | |
Gene conservation (protein-based analysis) | |
Analyse the gene conservation between one selected genome and all other SACGB genomes. | |
Codon and amino acid usages (DNA- and protein-based analysis) | |
Show or compare the codon and amino acid usages of one or more genomes or genomic elements. | |