SACGB - Social Amoebas Comparative Genome Browser - Summary for Polysphondylium pallidum, PN500.

Summary for Polysphondylium pallidum, PN500.

Add a genome

Remove a genome


chr: chromosome(s), pl: plasmid(s), seg: segment(s)

Free access

	Polysphondylium pallidum, PN500
Genomic elements	63 segment(s) Show details
Genome features	CDS: 11440 genes, length ø 1634 bp, gc-content ø 0.386 '+'-strand: 5636 genes, length ø 1656 bp, gc-content ø 0.387 '-'-strand: 5804 genes, length ø 1613 bp, gc-content ø 0.386 tRNA: 254 genes, length ø 75 bp, gc-content ø 0.526 '+'-strand: 136 genes, length ø 75 bp, gc-content ø 0.53 '-'-strand: 118 genes, length ø 75 bp, gc-content ø 0.522
COG categories
Amino acid transport and metabolism [E]	208
Carbohydrate transport and metabolism [G]	211
Cell cycle control, mitosis and meiosis [D]	209
Cell motility [N]	17
Cell wall/membrane biogenesis [M]	101
Chromatin structure and dynamics [B]	60
Coenzyme transport and metabolism [H]	119
Cytoskeleton [Z]	121
Defense mechanisms [V]	70
Energy production and conversion [C]	165
Extracellular structures [W]	4
Function unknown [S]	157
General function prediction only [R]	1107
Inorganic ion transport and metabolism [P]	127
Intracellular trafficking and secretion [U]	118
Lipid transport and metabolism [I]	215
NOT ANALYZED	254
Nuclear structure [Y]	5
Nucleotide transport and metabolism [F]	79
Posttranslational modification, protein turnover, chaperones [O]	402
RNA processing and modification [A]	37
Replication, recombination and repair [L]	490
Secondary metabolites biosynthesis, transport and catabolism [Q]	174
Signal transduction mechanisms [T]	371
Transcription [K]	405
Translation, ribosomal structure and biogenesis [J]	356
Unclassified [-]	7360