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2024-05-19 15:00:28

Gene list

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COG category: Cytoskeleton
Organism: Dictyostelium discoideum AX4, AX4

Number of genes found: 134

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Dictyostelium discoideum AX4, AX4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ChLim DDB_G0267490 contains a N-terminal Calponin Homology (CH) domain 3 LIM domains and 4 LIM-related domains (LRDs)DDB0232428 CDS212712 2061 - 0.311499
DDB_G0267586 DDB_G0267586 DDB0232428 CDS375348 1389 + 0.267099
DDB_G0267974 DDB_G0267974 DDB0232428 CDS1214003 2865 - 0.264223
DDB_G0269700 DDB_G0269700 DDB0232428 CDS3352107 2622 + 0.249809
DDB_G0269934 DDB_G0269934 DDB0232428 CDS3897216 6135 + 0.351263
DDB_G0270246 DDB_G0270246 DDB0232428 CDS4514326 1725 - 0.225507
DDB_G0274781 DDB_G0274781 contains three EF hands similar to mammalian neuron specific calcium-binding protein hippocalcin belongs to the frequenins a family of myristoyl-switch calcium-binding proteinsDDB0232429 CDS3825256 678 + 0.29646
DDB_G0276695 DDB_G0276695 DDB0232429 CDS7141543 1941 + 0.301391
DDB_G0277429 DDB_G0277429 DDB0232429 CDS8039644 2550 - 0.296863
DDB_G0278125 DDB_G0278125 DDB0232430 CDS327348 2496 - 0.333333
DDB_G0278255 DDB_G0278255 DDB0232430 CDS568794 1545 - 0.260841
DDB_G0279253 DDB_G0279253 DDB0232430 CDS1838283 1539 - 0.238467
DDB_G0279435 DDB_G0279435 DDB0232430 CDS2045716 1461 - 0.299795
DDB_G0281767 DDB_G0281767 DDB0232430 CDS4930354 2652 + 0.255656
DDB_G0282633 DDB_G0282633 DDB0232430 CDS6031309 2760 + 0.285507
DDB_G0282859 DDB_G0282859 DDB0232430 CDS6316518 1890 + 0.232804
DDB_G0283369 DDB_G0283369 DDB0232431 CDS587429 6252 - 0.274152
DDB_G0284145 DDB_G0284145 DDB0232431 CDS1523365 1317 - 0.2612
DDB_G0285261 DDB_G0285261 DDB0232431 CDS3027528 1266 + 0.239336
DDB_G0285265 DDB_G0285265 contains one EF hand similar to calmodulinDDB0232431 CDS3032493 420 - 0.292857
DDB_G0292586 DDB_G0292586 DDB0232433 CDS1803595 1368 + 0.29386
DDB_G0292664 DDB_G0292664 DDB0232433 CDS1919877 531 + 0.354049
DDB_G0293756 DDB_G0293756 DDB0232433 CDS3283369 3300 - 0.23
DDB_G0294557 DDB_G0294557 similar to the cortexillins actin-bundling proteins of the alpha-actininspectrin superfamilyDDB0232430 CDS517463 1470 - 0.317687
DDB_G0295671 DDB_G0295671 DDB0232431 CDS4703129 1083 - 0.237304
DDB_G0295713 DDB_G0295713 DDB0232430 CDS4417290 2115 - 0.249645
abpA DDB_G0268632 DDB0232428 CDS2137156 2586 + 0.361562
abpC DDB_G0269100 120 kDa F-actin binding protein also often called filamin involved in actin cytoskeleton organization motility and development enriched in prestalk cellsDDB0232428 CDS4554019 2574 - 0.408702
abpD DDB_G0287291 actin binding protein that is developmentally and cAMP-regulated associates with intracellular membranesDDB0232432 CDS222824 5217 + 0.242285
act1 DDB_G0289553 has 94DDB0232432 CDS2938326 1131 - 0.365164
act10 DDB_G0289811 has 94DDB0232432 CDS3337403 1131 + 0.415561
act11 DDB_G0288879 has 94DDB0232432 CDS2167534 1131 + 0.421751
act12 DDB_G0274129 has 94DDB0232429 CDS4718776 1131 - 0.386384
act13 DDB_G0274599 has 94DDB0232429 CDS4495093 1131 - 0.41733
act14 DDB_G0274137 has 94DDB0232429 CDS4418543 1131 + 0.418214
act15 DDB_G0272520 has 94DDB0232429 CDS1781191 1131 + 0.414677
act16 DDB_G0272248 has 94DDB0232429 CDS1607842 1131 - 0.392573
act17 DDB_G0274131 has 80DDB0232429 CDS4723516 1125 + 0.357333
act18 DDB_G0289489 has 83DDB0232432 CDS2886806 1143 + 0.343832
act19 DDB_G0274727 has 94DDB0232429 CDS4053689 1131 + 0.399646
act2 DDB_G0274133 has 94DDB0232429 CDS4722018 1131 + 0.386384
act20 DDB_G0274285 has 94DDB0232429 CDS4047769 1131 - 0.400531
act21 DDB_G0274561 has 94DDB0232429 CDS4052062 1131 - 0.399646
act22 DDB_G0275023 has 94DDB0232429 CDS5343575 1131 + 0.376658
act23 DDB_G0268744 DDB0232428 CDS2031686 1077 + 0.36676
act24 DDB_G0289505 has 80DDB0232432 CDS2876728 1134 + 0.347443
act25 DDB_G0289507 has 74DDB0232432 CDS2878511 1158 + 0.337651
act26 DDB_G0269902 has 64DDB0232428 CDS3826453 1128 + 0.300532
act27 DDB_G0289533 has 61DDB0232432 CDS2880348 1119 + 0.328865
act28 DDB_G0289511 contributes to DdPPK2 activity also described as member of the polyphosphate kinase PPK3 familyDDB0232432 CDS2883081 1062 + 0.335217
act29 DDB_G0286893 has 56DDB0232431 CDS5035700 1164 - 0.265464
act3 DDB_G0289487 has 92DDB0232432 CDS2884652 1131 + 0.358974
act30_ps DDB_G0289525 putative pseudogene contains an actin domainDDB0232432 CDS2874594 1098 + 0.343352
act31 DDB_G0269476 DDB0232428 CDS2844541 1068 + 0.293071
act32 DDB_G0269544 DDB0232428 CDS2967350 1179 - 0.274809
act33 DDB_G0287981 similar to macronuclear actin 1 of ciliates also similar to A. thaliana ACT11DDB0232432 CDS925837 1245 - 0.236948
act34_ps DDB_G0272446 putative pseudogene contains an incomplete actin domainDDB0232429 CDS1603869 756 - 0.366402
act35_ps DDB_G0280749 putative pseudogene contains a partial actin domainDDB0232430 CDS3674980 336 + 0.348214
act36_ps DDB_G0289509 putative pseudogene contains a partial actin domainDDB0232432 CDS2881811 408 + 0.338235
act37_ps DDB_G0280679 putative pseudogene contains a partial actin domainDDB0232430 CDS3624484 204 - 0.377451
act38_ps DDB_G0280883 putative pseudogene contains a partial actin domainDDB0232430 CDS3832477 267 + 0.370787
act39_ps DDB_G0290243 putative pseudogene contains a partial actin domainDDB0232432 CDS3768414 369 - 0.319783
act4 DDB_G0289005 has 94DDB0232432 CDS2234318 1131 - 0.419982
act5 DDB_G0289663 has 94DDB0232432 CDS3186992 1131 - 0.419098
act6 DDB_G0274135 has 94DDB0232429 CDS4055916 1131 + 0.397878
act7 DDB_G0280545 has 94DDB0232430 CDS3684122 1131 + 0.376658
act8 DDB_G0269234 has 94DDB0232428 CDS4602557 1131 + 0.425287
act9 DDB_G0274601 has 94DDB0232429 CDS4455464 1131 + 0.419098
arpA DDB_G0288937 centrosome-associated actin homolog contributes to the dynactin complex contributes to DdPPK2 activity also described as member of the polyphosphate kinase PPK3 familyDDB0232432 CDS2149735 1152 - 0.329861
arpB DDB_G0272106 component of the Dictyostelium Arp2Arp3 complex contributes to DdPPK2 activity also described as member of the polyphosphate kinase PPK3 familyDDB0232429 CDS1646887 1179 - 0.398643
arpC DDB_G0283755 component of the Dictyostelium Arp2Arp3 complexDDB0232431 CDS1135639 1257 - 0.381862
arpD DDB_G0280887 ortholog of A. thaliana ARP4 and very similar to the mammalian actin-like protein 6A which is involved in transcriptional activation and repression of select genes by chromatin remodelling DDB0232430 CDS3833482 1323 + 0.297808
arpE DDB_G0291728 ortholog of the conserved actin related protein ARP5 in mammalian named ACTR5 the yeast protein is a nuclear actin-related protein involved in chromatin remodelingbr bNomenclature conflict:b Do not confuse this gene with arcB the 34 kDa component of the Arp2Arp3 complex.DDB0232433 CDS714429 2055 + 0.287591
arpF DDB_G0287007 ortholog of the conserved actin related protein ARP6 in mammalian called ACTR6 a putative component of a chromatin-remodeling complexDDB0232431 CDS5196102 1473 + 0.260014
arpH DDB_G0287739 similar to mammalian and yeast actin related protein 10 part of the dynactin complexDDB0232432 CDS636584 1428 - 0.238095
calA DDB_G0279407 calcium-dependent regulatory protein involved in cytokinesis regulated by cytosolic Ca2 fluxes allowing differential binding to target CaM binding proteins (CaMBPs) binds several proteins among them nuclear NumA and Cdk5DDB0232430 CDS2244074 459 - 0.35512
calB DDB_G0269104 DDB0232428 CDS2981116 450 + 0.275556
cbpL DDB_G0288785 putative Ca2-binding protein with 4 putative EF-hands belongs to the frequenins a family of myristoyl-switch calcium-binding proteinsDDB0232432 CDS1964055 576 + 0.258681
cbpM DDB_G0286371 putative Ca2-binding protein with 4 putative EF-hands belongs to the frequenins a family of myristoyl-switch calcium-binding proteinsDDB0232431 CDS4370399 552 - 0.277174
cenA DDB_G0288427 similar to human Centrin 2 EF-hand protein localizes to the centromer from which it dissociates during mitosisDDB0232432 CDS1525659 456 + 0.245614
cenB DDB_G0279151 centrin required for nuclear and centrosome stability localizes to the nucleus in interphase but not during mitosis and is involved in the centrosome cycleDDB0232430 CDS1697579 453 - 0.258278
cnbA DDB_G0267446 regulatory subunit of the Casup2supcalmodulin-dependent serinethreonine protein phosphatase contains an EF-hand calcium binding motifDDB0232428 CDS816934 1041 - 0.26513
cnbB DDB_G0285999 contains 3 EF-hands similar to calcineurin B (cnbA) the regulatory subunit of the Ca2calmodulin-dependent serinethreonine protein phosphataseDDB0232431 CDS3918232 552 + 0.269928
ctxA DDB_G0289483 member of the alpha-actininspectrin superfamily dimerizes with cortexillin II involved in cytokinesis and development and associates with the actin cytoskeletonDDB0232432 CDS2847194 1335 - 0.347566
ctxB DDB_G0276893 member of the alpha-actininspectrin superfamily dimerizes with cortexillin I involved in cytokinesis and development and associates with the actin cytoskeletonDDB0232429 CDS7304770 1326 - 0.3454
dhcA DDB_G0276355 DDB0232429 CDS6681538 14193 - 0.337631
eb1 DDB_G0283607 DDB0232431 CDS912876 1521 + 0.326759
fia DDB_G0284389 composed of a DUF292 domain at the amino terminus two filaminABP280 repeats and an actin domain at the carboxyl terminusDDB0232431 CDS1932445 2835 - 0.337919
fimA DDB_G0277855 calcium-regulated actin bundling protein binds F-actin enriched in gametesDDB0232430 CDS187950 1833 - 0.346427
fimC DDB_G0278545 contains 4 calponin homology (CH) domains two CH domains constitute one actin binding domainDDB0232430 CDS1046298 3642 - 0.266337
fimD DDB_G0270762 contains 4 calponin homology (CH) domains two CH domains constitute one actin binding domainDDB0232428 CDS4467278 5145 + 0.230709
gacGG DDB_G0280093 DDB0232430 CDS2923710 3612 - 0.295958
gefC DDB_G0282381 DDB0232430 CDS6243320 4374 - 0.299268
gxcB DDB_G0269424 DDB0232428 CDS2732721 3597 - 0.263553
gxcCC DDB_G0279123 contains two actin binding domains a putative calmodulin binding domain and a Dbl homology (DH) domain specific for Rho guanine nucleotide exchange factors (GEF)DDB0232430 CDS1613622 3438 + 0.3121
gxcZ DDB_G0293928 DDB0232433 CDS3506582 3087 - 0.259475
iqgD DDB_G0275731 similar to RasGAP proteins contains one calponin homology domain and one rasGAP domainDDB0232429 CDS5940660 4158 - 0.309524
kif1 DDB_G0290963 ortholog of C. elegans Unc104 and mammalian KIF1A involved in intracellular transportDDB0232432 CDS4896037 6618 - 0.316863
kif10 DDB_G0293198 DDB0232433 CDS2654607 3717 - 0.262039
kif11 DDB_G0291039 DDB0232432 CDS4850945 2058 - 0.306122
kif12 DDB_G0268258 MKLP1 subfamily kinesin required for cell division in suspension and for nuclei separation during karyokinesis localized in the nucleus during interphase and in the centrosome spindle and spindle midbody during cytokinesisDDB0232428 CDS1654404 4500 + 0.277333
kif13 DDB_G0288361 belongs to the BimCEg5 subfamily predicted to play a role in mitosis DDB0232432 CDS1422250 3798 + 0.28673
kif2 DDB_G0267396 belongs to the NCDKar3 subfamily predicted to play a role in mitosis DDB0232428 CDS351991 2379 - 0.286255
kif3 DDB_G0280967 kinesin-1 family protein involved in intracellular transport belongs to the kinesin KHC subfamilyDDB0232430 CDS4109358 3582 + 0.303183
kif4 DDB_G0285101 belongs to the CENP-E subfamily predicted to play a role in mitosis has a putative nuclear localization signal C-terminal to its motor domainDDB0232431 CDS2856191 5769 + 0.268677
kif5 DDB_G0276369 kinesin-1 family protein belongs to the kinesin KHC subfamily binds microtubules in an ATP-dependent manner and bundles actin in vitroDDB0232429 CDS6648064 2973 + 0.282879
kif6 DDB_G0267404 belongs to the MCAKKif2 subfamily contains 1 SAM domain predicted to play a role in mitosis DDB0232428 CDS1747506 3093 - 0.282897
kif7 DDB_G0281555 DDB0232430 CDS4819674 3768 + 0.286359
kif8 DDB_G0284471 DDB0232431 CDS2103969 5622 - 0.284596
kif9 DDB_G0274603 DDB0232429 CDS4280121 3669 - 0.275279
mhcA DDB_G0286355 myosin II heavy chain component of the actin-based molecular motor (conventional myosin) has actin-activated ATPase activity myosin II consists of two heavy chains and one essential (mlcE) and one regulatory light chain (mlcR) respectivelyDDB0232431 CDS4451077 6351 + 0.377893
mlcC DDB_G0289563 light chain that binds to the neck region of myoC contains two calcium-binding EF-hand motifs but does not bind calciumDDB0232432 CDS2954406 225 - 0.311111
mlcD DDB_G0277917 DDB0232430 CDS607477 444 + 0.304054
mlcE DDB_G0277859 component of actin-based molecular motor myosin II (conventional myosin) componentDDB0232430 CDS76885 453 + 0.364238
mlcR DDB_G0276077 component of actin-based molecular motor myosin II (conventional myosin) componentDDB0232429 CDS6426413 486 + 0.31893
myoA DDB_G0280039 actin-based motor unconventional myosin heavy chainDDB0232430 CDS3224159 2985 - 0.305863
myoB DDB_G0289117 long tailed class-1 myosin a molecular motor protein that localizes to actin-rich structures at the leading edge of migrating cellsDDB0232432 CDS2410248 3336 + 0.351619
myoC DDB_G0276617 DDB0232429 CDS7046886 3549 - 0.351085
myoD DDB_G0275447 class I (unconventiona) myosin component of actin-based molecular motorDDB0232429 CDS5600309 3330 + 0.351652
myoE DDB_G0288679 (unconventional) class I myosin fast motor molecule involved in phagocytosisDDB0232432 CDS1829072 3018 - 0.336978
myoF DDB_G0289177 DDB0232432 CDS2531958 3216 - 0.28607
myoG DDB_G0276363 required for cell polarity and chemotaxis to cAMP plays a role in mediating early chemotactic signalling contains an N-terminal motor domain two MyTH4 domains an IQ calmodulin-binding region and a SH3 domainDDB0232429 CDS6748878 10341 + 0.289237
myoH DDB_G0289447 DDB0232432 CDS2840200 5316 - 0.258653
myoI DDB_G0274455 similar to the conserved MYO7A unconventional myosin required in Dictyostelium for phagocytosis and substrate adhesionDDB0232429 CDS4534415 7074 + 0.326972
myoJ DDB_G0272112 conditional processive motor protein that can move over long distances along F-actin without disassociating processiveness depends on high physiological Mgsup2sup concentrationsDDB0232429 CDS1452059 6738 + 0.309884
myoK DDB_G0274575 class 1 myosin lacking the traditional tail domains common to short-tailed myosins binds actin and is in complex with several other proteins involved in phagocytosis maintenance of cortical tension and motilityDDB0232429 CDS3960245 2577 + 0.353124
myoM DDB_G0292262 unconventional myosin and guanyl-nucleotide exchange factor which acts on Rac1A Rac1B and human Rac1 but not on RacC and RacEDDB0232433 CDS1463619 5214 + 0.274262
ncsA DDB_G0275931 contains four EF-hands belongs to the frequenins a family of myristoyl-switch calcium-binding proteinsDDB0232429 CDS6088223 561 - 0.279857
tbcD DDB_G0268516 DDB0232428 CDS802089 4443 + 0.238352
tirA DDB_G0289237 DDB0232432 CDS2526970 4011 - 0.222638
tubA DDB_G0287689 monomeric subunit of microtubules as most other species Dicty has two alpha-tubulin genes and only one of each beta- and gamma-tubulin the other alpha tubulin gene is DDB0232432 CDS707217 1374 - 0.381368
tubA2 DDB_G0281889 bCommunity annotationb: As most other species Dicty has two alpha-tubulin genes and only one of each beta- and gamma-tubulin. Dicty's two alpha tubulin genes are both moderately upregulated in the Dicty rblA disruptant but tubA2 is substantially more so. In development tubA2 shows an expression trajectory approximating that of mitotic genes while tubA does not. The promoter of tubA2 contains a likely E2F binding sequence (ATTGGCGCT). It is possible but perhaps not compelling that tubA2 has specific mitotic functions. Harry MacWilliams July 2010br DDB0232430 CDS5074777 1359 + 0.293598
tubB DDB_G0269196 DDB0232428 CDS3261649 1368 - 0.388889
tubC DDB_G0271738 DDB0232429 CDS727031 1389 + 0.332613