Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Dictyostelium discoideum AX4, AX4
Number of genes found: 395
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Dictyostelium discoideum AX4, AX4 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
DDB_G0267794 | DDB_G0267794 | DDB0232428 | CDS | 860671 | 1923 | - | 0.314613 | |
DDB_G0267850 | DDB_G0267850 | DDB0232428 | CDS | 965758 | 1857 | + | 0.310716 | |
DDB_G0267872 | DDB_G0267872 | conserved protein containing a Suneukaryotic nucleolar NOL1Nop2p domain | DDB0232428 | CDS | 1012281 | 2043 | - | 0.22467 |
DDB_G0268518 | DDB_G0268518 | DDB0232428 | CDS | 810583 | 792 | - | 0.272727 | |
DDB_G0269450 | DDB_G0269450 | DDB0232428 | CDS | 2798117 | 621 | - | 0.233494 | |
DDB_G0269640 | DDB_G0269640 | DDB0232428 | CDS | 3205382 | 495 | - | 0.258586 | |
DDB_G0269676 | DDB_G0269676 | DDB0232428 | CDS | 3289699 | 1557 | - | 0.219011 | |
DDB_G0269762 | DDB_G0269762 | DDB0232428 | CDS | 3512075 | 2475 | - | 0.314747 | |
DDB_G0269986 | DDB_G0269986 | DDB0232428 | CDS | 3977474 | 2391 | + | 0.24634 | |
DDB_G0270386 | DDB_G0270386 | DDB0232428 | CDS | 4735593 | 1719 | + | 0.267016 | |
DDB_G0270622 | DDB_G0270622 | DDB0232428 | CDS | 3391069 | 255 | + | 0.298039 | |
DDB_G0270910 | DDB_G0270910 | DDB0232428 | CDS | 3293315 | 2934 | + | 0.293115 | |
DDB_G0271100 | DDB_G0271100 | DDB0232429 | CDS | 47597 | 1581 | - | 0.248577 | |
DDB_G0271370 | DDB_G0271370 | DDB0232429 | CDS | 115000 | 933 | + | 0.222937 | |
DDB_G0271378 | DDB_G0271378 | DDB0232429 | CDS | 147174 | 1689 | - | 0.201895 | |
DDB_G0271396 | DDB_G0271396 | similar to human EXOSC6 and S. pombe mtr3 which are components of the exosome a 3'-5' exoribonuclease complex involved in RNA processing | DDB0232429 | CDS | 213822 | 654 | + | 0.318043 |
DDB_G0271470 | DDB_G0271470 | DDB0232429 | CDS | 406925 | 528 | - | 0.284091 | |
DDB_G0271796 | DDB_G0271796 | DDB0232429 | CDS | 753355 | 951 | + | 0.233438 | |
DDB_G0271854 | DDB_G0271854 | DDB0232429 | CDS | 969621 | 849 | + | 0.269729 | |
DDB_G0271910 | DDB_G0271910 | ortholog of human MCTS1 which is an anti-oncogene that may play a role in cell cycle regulation contains a PUA domain which is predicted to bind RNA | DDB0232429 | CDS | 1018193 | 549 | + | 0.26776 |
DDB_G0271914 | DDB_G0271914 | DDB0232429 | CDS | 1000440 | 675 | - | 0.358519 | |
DDB_G0272030 | DDB_G0272030 | DDB0232429 | CDS | 1189650 | 678 | - | 0.361357 | |
DDB_G0272442 | DDB_G0272442 | DDB0232429 | CDS | 1598330 | 705 | - | 0.307801 | |
DDB_G0272664 | DDB_G0272664 | DDB0232429 | CDS | 2249594 | 393 | + | 0.302799 | |
DDB_G0273135 | DDB_G0273135 | there is a second copy of this gene | DDB0232429 | CDS | 2846671 | 1029 | + | 0.221574 |
DDB_G0273295 | DDB_G0273295 | there is a second copy of this gene | DDB0232429 | CDS | 2642763 | 369 | - | 0.273713 |
DDB_G0273331 | DDB_G0273331 | there is a second copy of this gene | DDB0232429 | CDS | 2538856 | 657 | + | 0.242009 |
DDB_G0273343 | DDB_G0273343 | there is a second copy of this gene | DDB0232429 | CDS | 2638627 | 1158 | - | 0.212435 |
DDB_G0273411 | DDB_G0273411 | there is a second copy of this gene | DDB0232429 | CDS | 2935949 | 669 | + | 0.282511 |
DDB_G0273555 | DDB_G0273555 | there is a second copy of this gene | DDB0232429 | CDS | 3095016 | 669 | - | 0.282511 |
DDB_G0273625 | DDB_G0273625 | there is a second copy of this gene | DDB0232429 | CDS | 3184086 | 1029 | - | 0.221574 |
DDB_G0273771 | DDB_G0273771 | there is a second copy of this gene | DDB0232429 | CDS | 3388529 | 369 | + | 0.273713 |
DDB_G0273777 | DDB_G0273777 | there is a second copy of this gene | DDB0232429 | CDS | 3392002 | 1158 | + | 0.212435 |
DDB_G0273859 | DDB_G0273859 | there is a second copy of this gene | DDB0232429 | CDS | 3492274 | 657 | - | 0.242009 |
DDB_G0274407 | DDB_G0274407 | DDB0232429 | CDS | 4661589 | 549 | - | 0.360656 | |
DDB_G0275081 | DDB_G0275081 | similar to bacterial proteins of the YjgF superfamily homolog of Psedomonas sp. amnD (2-aminomuconate deaminase) also matches PFAM HMM for endoribonuclease L-PSP | DDB0232429 | CDS | 5148814 | 426 | + | 0.316901 |
DDB_G0275509 | DDB_G0275509 | DDB0232429 | CDS | 6023716 | 2607 | + | 0.197929 | |
DDB_G0275613 | DDB_G0275613 | DDB0232429 | CDS | 5606831 | 1314 | + | 0.289954 | |
DDB_G0275673 | DDB_G0275673 | DDB0232429 | CDS | 5694864 | 363 | + | 0.250689 | |
DDB_G0275751 | DDB_G0275751 | belongs to the IF-2 family an essential component for the initiation of protein synthesis | DDB0232429 | CDS | 5859705 | 2979 | - | 0.335347 |
DDB_G0275919 | DDB_G0275919 | DDB0232429 | CDS | 6037798 | 2409 | - | 0.249481 | |
DDB_G0275967 | DDB_G0275967 | DDB0232429 | CDS | 6187951 | 1914 | - | 0.283699 | |
DDB_G0276449 | DDB_G0276449 | DDB0232429 | CDS | 6977542 | 1206 | - | 0.254561 | |
DDB_G0276783 | DDB_G0276783 | homolog of human EXOSC3 (exosome component 3) and S. cerevisiae RRP40 (Ribosomal RNA-processing protein 40) S. cerevisiae RRP40 is a component of the exosome 3'-5' exoribonuclease complex but lacks exonuclease activity | DDB0232429 | CDS | 7291532 | 714 | - | 0.278711 |
DDB_G0277081 | DDB_G0277081 | DDB0232429 | CDS | 7472098 | 1179 | - | 0.262935 | |
DDB_G0277213 | DDB_G0277213 | DDB0232429 | CDS | 7638955 | 705 | + | 0.370213 | |
DDB_G0277347 | DDB_G0277347 | DDB0232429 | CDS | 7797355 | 1278 | - | 0.2723 | |
DDB_G0277355 | DDB_G0277355 | DDB0232429 | CDS | 7838828 | 969 | - | 0.415893 | |
DDB_G0277359 | DDB_G0277359 | DDB0232429 | CDS | 7855699 | 1161 | + | 0.209302 | |
DDB_G0277479 | DDB_G0277479 | DDB0232429 | CDS | 8152464 | 1596 | + | 0.244987 | |
DDB_G0277761 | DDB_G0277761 | similar to bacterial endoribonucleases similar to human HRSP12 (ribonuclease UK114) an endoribonuclease which cleaves mRNA and inhibits protein synthesis | DDB0232429 | CDS | 8470556 | 390 | + | 0.346154 |
DDB_G0278179 | DDB_G0278179 | contains two myb domains similar to Arabidopsis thaliana DNAJ heat shock N-terminal domain-containing protein (NP_187752.1) and Mus musculus zuotin related factor 2 (NP_033610.1) | DDB0232430 | CDS | 400484 | 1905 | - | 0.371129 |
DDB_G0278505 | DDB_G0278505 | conserved in bacteria similar to human HEMK1 (hemK methyltransferase family member 1) and S. cerevisiae MTQ1 (mitochondrial N(5)-glutamine methyltransferase MTQ1) | DDB0232430 | CDS | 980321 | 1032 | + | 0.194767 |
DDB_G0278841 | DDB_G0278841 | DDB0232430 | CDS | 1265394 | 1560 | - | 0.253846 | |
DDB_G0278937 | DDB_G0278937 | DDB0232430 | CDS | 1214678 | 2715 | + | 0.271455 | |
DDB_G0278955 | DDB_G0278955 | DDB0232430 | CDS | 1366879 | 1212 | + | 0.263201 | |
DDB_G0279205 | DDB_G0279205 | similar to the conserved CAATT binding factor which is essential for growth and necessary for 60S ribosomal subunit biogenesis | DDB0232430 | CDS | 1747299 | 3162 | - | 0.280519 |
DDB_G0279227 | DDB_G0279227 | DDB0232430 | CDS | 1794406 | 735 | + | 0.289796 | |
DDB_G0279557 | DDB_G0279557 | contains 8 PUF domains D. melanogaster pumilio binds through a PUF domain to the 3' UTR of target mRNAs | DDB0232430 | CDS | 2250584 | 4488 | - | 0.343806 |
DDB_G0280251 | DDB_G0280251 | similar to human EXOSC7 which is a component of the exosome a 3'-5' exoribonuclease complex involved in RNA processing | DDB0232430 | CDS | 3165971 | 975 | - | 0.285128 |
DDB_G0280257 | DDB_G0280257 | DDB0232430 | CDS | 3173383 | 1245 | + | 0.324498 | |
DDB_G0280265 | DDB_G0280265 | DDB0232430 | CDS | 3182303 | 543 | + | 0.232044 | |
DDB_G0280287 | DDB_G0280287 | DDB0232430 | CDS | 3207518 | 600 | - | 0.3 | |
DDB_G0280463 | DDB_G0280463 | DDB0232430 | CDS | 3394025 | 2241 | - | 0.262383 | |
DDB_G0280507 | DDB_G0280507 | DDB0232430 | CDS | 3459592 | 1359 | - | 0.260486 | |
DDB_G0280703 | DDB_G0280703 | DDB0232430 | CDS | 3648372 | 270 | + | 0.314815 | |
DDB_G0281097 | DDB_G0281097 | DDB0232430 | CDS | 4057793 | 1737 | - | 0.274036 | |
DDB_G0281601 | DDB_G0281601 | DDB0232430 | CDS | 4697870 | 429 | - | 0.261072 | |
DDB_G0281619 | DDB_G0281619 | DDB0232430 | CDS | 4714928 | 1515 | + | 0.213861 | |
DDB_G0281925 | DDB_G0281925 | DDB0232430 | CDS | 5132437 | 1761 | - | 0.366269 | |
DDB_G0281979 | DDB_G0281979 | DDB0232430 | CDS | 5208875 | 855 | - | 0.281871 | |
DDB_G0282171 | DDB_G0282171 | DDB0232430 | CDS | 5485189 | 684 | - | 0.387427 | |
DDB_G0282255 | DDB_G0282255 | DDB0232430 | CDS | 5579876 | 1152 | - | 0.366319 | |
DDB_G0282387 | DDB_G0282387 | has similarity to mammalian exonuclease 3'-5' domain-like-containing protein 1 (EXDL1) | DDB0232430 | CDS | 5690073 | 1173 | + | 0.226769 |
DDB_G0282855 | DDB_G0282855 | DDB0232430 | CDS | 6304937 | 1299 | + | 0.237875 | |
DDB_G0282961 | DDB_G0282961 | DDB0232431 | CDS | 57054 | 1716 | - | 0.277389 | |
DDB_G0283061 | DDB_G0283061 | DDB0232431 | CDS | 69391 | 1032 | - | 0.293605 | |
DDB_G0283275 | DDB_G0283275 | similar to bacterial 50S ribosomal L4L1e proteins | DDB0232431 | CDS | 442808 | 777 | + | 0.292149 |
DDB_G0283309 | DDB_G0283309 | similar to the eIF-2B alphabetadelta subunits family | DDB0232431 | CDS | 511242 | 1041 | - | 0.397695 |
DDB_G0283407 | DDB_G0283407 | DDB0232431 | CDS | 632298 | 1368 | - | 0.214181 | |
DDB_G0283445 | DDB_G0283445 | DDB0232431 | CDS | 707432 | 1284 | + | 0.221184 | |
DDB_G0283773 | DDB_G0283773 | putative GTPase very conserved in protozoa and fungi | DDB0232431 | CDS | 1081883 | 1305 | - | 0.288123 |
DDB_G0283823 | DDB_G0283823 | DDB0232431 | CDS | 1177277 | 600 | + | 0.273333 | |
DDB_G0283861 | DDB_G0283861 | DDB0232431 | CDS | 1072483 | 564 | + | 0.289007 | |
DDB_G0284053 | DDB_G0284053 | DDB0232431 | CDS | 1473938 | 714 | + | 0.268908 | |
DDB_G0284575 | DDB_G0284575 | DDB0232431 | CDS | 2173651 | 1815 | - | 0.344353 | |
DDB_G0284841 | DDB_G0284841 | DDB0232431 | CDS | 2510140 | 2640 | + | 0.273106 | |
DDB_G0285237 | DDB_G0285237 | DDB0232431 | CDS | 2990906 | 705 | + | 0.28227 | |
DDB_G0285377 | DDB_G0285377 | DDB0232431 | CDS | 3204171 | 666 | - | 0.279279 | |
DDB_G0285499 | DDB_G0285499 | DDB0232431 | CDS | 3314745 | 5034 | + | 0.197855 | |
DDB_G0285543 | DDB_G0285543 | DDB0232431 | CDS | 3362096 | 2157 | + | 0.255911 | |
DDB_G0286023 | DDB_G0286023 | DDB0232431 | CDS | 3954952 | 264 | - | 0.32197 | |
DDB_G0286161 | DDB_G0286161 | DDB0232431 | CDS | 4152139 | 1269 | + | 0.291568 | |
DDB_G0286567 | DDB_G0286567 | DDB0232431 | CDS | 4642679 | 1848 | + | 0.237554 | |
DDB_G0286871 | DDB_G0286871 | DDB0232431 | CDS | 5008976 | 573 | + | 0.233857 | |
DDB_G0286929 | DDB_G0286929 | DDB0232431 | CDS | 5090123 | 651 | + | 0.27957 | |
DDB_G0286941 | DDB_G0286941 | DDB0232431 | CDS | 5119924 | 2415 | + | 0.291511 | |
DDB_G0287079 | DDB_G0287079 | DDB0232431 | CDS | 5302047 | 1824 | + | 0.247259 | |
DDB_G0287639 | DDB_G0287639 | DDB0232432 | CDS | 538405 | 2037 | + | 0.258714 | |
DDB_G0288019 | DDB_G0288019 | DDB0232432 | CDS | 981451 | 720 | - | 0.306944 | |
DDB_G0288099 | DDB_G0288099 | DDB0232432 | CDS | 1100340 | 765 | - | 0.256209 | |
DDB_G0288157 | DDB_G0288157 | DDB0232432 | CDS | 1161244 | 732 | - | 0.266393 | |
DDB_G0288477 | DDB_G0288477 | DDB0232432 | CDS | 1580012 | 1914 | - | 0.3093 | |
DDB_G0288821 | DDB_G0288821 | DDB0232432 | CDS | 2033361 | 951 | - | 0.33123 | |
DDB_G0288897 | DDB_G0288897 | DDB0232432 | CDS | 2093655 | 1050 | - | 0.202857 | |
DDB_G0289303 | DDB_G0289303 | DDB0232432 | CDS | 2604715 | 1350 | - | 0.295556 | |
DDB_G0289401 | DDB_G0289401 | DDB0232432 | CDS | 2748299 | 780 | - | 0.255128 | |
DDB_G0289415 | DDB_G0289415 | DDB0232432 | CDS | 2775105 | 2037 | - | 0.307806 | |
DDB_G0289469 | DDB_G0289469 | similar to D. purpureum and P. pallidum protein C-terminal region similar to ribosomal protein S15P family | DDB0232432 | CDS | 2826905 | 1824 | + | 0.307018 |
DDB_G0289987 | DDB_G0289987 | DDB0232432 | CDS | 3515224 | 3111 | + | 0.309547 | |
DDB_G0290031 | DDB_G0290031 | belongs to the ribosomal protein S8e family ortholog of human TINP1 (TGF-beta-inducible nuclear protein 1) and S. cerevisiae NSA2 NSA2 (NOP seven associated 2) is involved in the biogenesis of the 60S ribosomal subunit | DDB0232432 | CDS | 3562515 | 783 | + | 0.342273 |
DDB_G0290147 | DDB_G0290147 | DDB0232432 | CDS | 3711190 | 345 | + | 0.292754 | |
DDB_G0290299 | DDB_G0290299 | DDB0232432 | CDS | 3922756 | 363 | - | 0.289256 | |
DDB_G0290387 | DDB_G0290387 | similar to D. purpureum proteins small gene family in both species | DDB0232432 | CDS | 4019200 | 927 | + | 0.307443 |
DDB_G0290553 | DDB_G0290553 | DDB0232432 | CDS | 4265295 | 1506 | - | 0.233732 | |
DDB_G0291310 | DDB_G0291310 | DDB0232433 | CDS | 112763 | 1143 | + | 0.314086 | |
DDB_G0291328 | DDB_G0291328 | DDB0232433 | CDS | 128308 | 744 | - | 0.322581 | |
DDB_G0291820 | DDB_G0291820 | DDB0232433 | CDS | 810431 | 942 | - | 0.314225 | |
DDB_G0292010 | DDB_G0292010 | DDB0232433 | CDS | 1014321 | 2334 | + | 0.288346 | |
DDB_G0292048 | DDB_G0292048 | DDB0232433 | CDS | 1082258 | 774 | + | 0.237726 | |
DDB_G0292080 | DDB_G0292080 | DDB0232433 | CDS | 1159633 | 972 | + | 0.359053 | |
DDB_G0292096 | DDB_G0292096 | contains a cytidine and deoxycytidylate deaminase zinc-binding region contains a carbohydrate-binding domain contains a predicted signal peptide | DDB0232433 | CDS | 1176701 | 966 | - | 0.421325 |
DDB_G0292108 | DDB_G0292108 | DDB0232433 | CDS | 1192584 | 2490 | - | 0.278715 | |
DDB_G0292138 | DDB_G0292138 | DDB0232433 | CDS | 1250981 | 552 | + | 0.309783 | |
DDB_G0292286 | DDB_G0292286 | DDB0232433 | CDS | 1390052 | 3726 | + | 0.27241 | |
DDB_G0292626 | DDB_G0292626 | belongs to the RAS-like GTPase superfamily similar to bacterial GTP-binding protein YchF similar to D. purpureum protein | DDB0232433 | CDS | 1866598 | 1230 | + | 0.293496 |
DDB_G0292692 | DDB_G0292692 | DDB0232433 | CDS | 1955631 | 882 | + | 0.246032 | |
DDB_G0292882 | DDB_G0292882 | DDB0232433 | CDS | 2208837 | 1020 | - | 0.32549 | |
DDB_G0292914 | DDB_G0292914 | DDB0232433 | CDS | 2269065 | 723 | + | 0.262794 | |
DDB_G0293064 | DDB_G0293064 | DDB0232433 | CDS | 2418202 | 1722 | - | 0.334495 | |
DDB_G0293090 | DDB_G0293090 | DDB0232433 | CDS | 2463701 | 6024 | + | 0.336155 | |
DDB_G0293244 | DDB_G0293244 | DDB0232433 | CDS | 2638704 | 1941 | + | 0.297269 | |
DDB_G0293504 | DDB_G0293504 | belongs to the nucleotidyltransferase superfamily contains one poly A polymerase head domain | DDB0232433 | CDS | 2968920 | 1677 | - | 0.285033 |
DDB_G0293622 | DDB_G0293622 | DDB0232433 | CDS | 3159608 | 2976 | + | 0.290995 | |
DDB_G0295715 | DDB_G0295715 | DDB0232430 | CDS | 5300180 | 4668 | + | 0.322408 | |
DDB_G0295845 | DDB_G0295845 | DDB0232429 | CDS | 1309841 | 711 | - | 0.299578 | |
DG2033 | DDB_G0278965 | DDB0232430 | CDS | 1480041 | 5043 | + | 0.223478 | |
alaS | DDB_G0277823 | catalyzes the reaction ATP L-alanine tRNAAla AMP diphosphate L-alanyl-tRNAAla | DDB0232430 | CDS | 919657 | 2841 | - | 0.377684 |
argS1 | DDB_G0272867 | catalyzes the reaction ATP L-arginine tRNAArg AMP diphosphate L-arginyl-tRNAArg | DDB0232429 | CDS | 2065311 | 1770 | + | 0.332203 |
argS2 | DDB_G0287803 | catalyzes the reaction ATP L-arginine tRNAArg AMP diphosphate L-arginyl-tRNAArg | DDB0232432 | CDS | 724797 | 2217 | + | 0.280108 |
asnS1 | DDB_G0275263 | catalyzes the reaction ATP L-asparagine tRNAAsn AMP diphosphate L-asparaginyl-tRNAAsn expression is repressed in low calcium | DDB0232429 | CDS | 5075841 | 1962 | - | 0.356269 |
asnS2 | DDB_G0268100 | catalyzes the reaction ATP L-asparagine tRNAAsn AMP diphosphate L-asparaginyl-tRNAAsn similar to bacterial Asn-tRNA-ligases | DDB0232428 | CDS | 1453036 | 1383 | - | 0.315257 |
aspA | DDB_G0271924 | catalyzes the reaction L-asparagine Hsub2subO L-aspartate NHsub3sub | DDB0232429 | CDS | 1048524 | 1308 | + | 0.316514 |
aspS1 | DDB_G0272236 | catalyzes the reaction ATP L-aspartate tRNAAsp AMP diphosphate L-aspartyl-tRNAAsp | DDB0232429 | CDS | 1722204 | 1731 | + | 0.367995 |
aspS2 | DDB_G0272304 | catalyzes the reaction ATP L-aspartate tRNAAsp AMP diphosphate L-aspartyl-tRNAAsp | DDB0232429 | CDS | 1720046 | 1710 | + | 0.201754 |
bms1l | DDB_G0287891 | DDB0232432 | CDS | 751626 | 3618 | + | 0.298784 | |
bxdc2 | DDB_G0287937 | ortholog of the H. sapiens BXDC2 and S. cerevisiae BRX1 a nucleolar protein involved in the assembly of the large ribosomal subunit | DDB0232432 | CDS | 871082 | 981 | - | 0.313965 |
bxdc5 | DDB_G0285829 | ortholog of S. cerevisiae RPF1 and H. sapiens BXDC5 a nucleolar protein involved in the assembly of the large ribosomal subunit | DDB0232431 | CDS | 3708077 | 954 | - | 0.292453 |
cpsf2 | DDB_G0270392 | ortholog of the human CPSF2 and yeast CFT2 the 100 kDa subunit of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs | DDB0232428 | CDS | 4749183 | 2355 | + | 0.292144 |
cpsf3 | DDB_G0274799 | ortholog of the human CPSF3 and yeast YSH1 the 73 kDa subunit of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs | DDB0232429 | CDS | 3904161 | 2325 | - | 0.308387 |
cysS | DDB_G0287159 | catalyzes the reaction ATP L-cysteine tRNACys AMP diphosphate L-cysteinyl-tRNACys | DDB0232431 | CDS | 5412959 | 1983 | - | 0.328795 |
dclre1 | DDB_G0277755 | putative ortholog of yeast PSO2 gene required for double-strand break repair also related to the NHEJ DNA repair protein Artemis | DDB0232429 | CDS | 8451915 | 2763 | + | 0.247557 |
ddiA | DDB_G0281293 | DDB0232430 | CDS | 4362245 | 672 | - | 0.352679 | |
ddx1 | DDB_G0269966 | ortholog of ATP-dependent RNA helicase DDX1 contains an SPRY domain which is of unknown function | DDB0232428 | CDS | 3941617 | 2298 | + | 0.302002 |
ddx10 | DDB_G0284017 | DDB0232431 | CDS | 1436851 | 2637 | + | 0.277209 | |
ddx17 | DDB_G0293168 | conserved RNA helicase very similar to mammalian DDX17 (p72) and DDX5 (p68) and yeast DBP2 | DDB0232433 | CDS | 2360817 | 2358 | - | 0.370229 |
ddx18 | DDB_G0282741 | DDB0232430 | CDS | 6230156 | 1809 | - | 0.334439 | |
ddx20 | DDB_G0277527 | ortholog of H. sapiens DDX20Gemin 3 a component of Cajal bodies (CBs) and Gems nuclear organelles responsible for spliceosomal small nuclear ribonucleoprotein (snRNP) biogenesis | DDB0232429 | CDS | 8128317 | 2550 | - | 0.22902 |
ddx24 | DDB_G0281841 | DDB0232430 | CDS | 5000989 | 2823 | + | 0.30039 | |
ddx27 | DDB_G0281711 | DDB0232430 | CDS | 4866495 | 2352 | + | 0.305697 | |
ddx3 | DDB_G0283661 | conserved RNA helicase very similar to mammalian DDX3X and DDX3Y and yeast DBP1 | DDB0232431 | CDS | 939305 | 2139 | - | 0.370266 |
ddx31 | DDB_G0271708 | DDB0232429 | CDS | 830367 | 2727 | + | 0.26696 | |
ddx41 | DDB_G0287361 | conserved RNA helicase ortholog of D. melanogaster DEAD box protein abstrakt which is required during post-transcriptional gene expression | DDB0232432 | CDS | 183547 | 2016 | - | 0.315476 |
ddx42 | DDB_G0288501 | conserved putative RNA helicase very similar to mammalian DDX42 | DDB0232432 | CDS | 1607944 | 2961 | + | 0.274232 |
ddx47 | DDB_G0280147 | DDB0232430 | CDS | 3015956 | 1641 | - | 0.312614 | |
ddx49 | DDB_G0270396 | DDB0232428 | CDS | 4752654 | 1527 | + | 0.27112 | |
ddx5 | DDB_G0293036 | DDB0232433 | CDS | 2373448 | 2094 | + | 0.258835 | |
ddx51 | DDB_G0293740 | DDB0232433 | CDS | 3249527 | 1692 | - | 0.229905 | |
ddx52 | DDB_G0274325 | ortholog of H. sapiens DDX52 and S. cerevisiae ROK1 (Rescuer Of Kem1) ROK1 required for 18S rRNA synthesis | DDB0232429 | CDS | 3957548 | 2007 | + | 0.271051 |
ddx55 | DDB_G0291588 | ortholog of H. sapiens DDX55 and S. cerevisiae SBP4 (Suppressor of PAB1) SBP4 required for synthesis of 60S ribosomal subunits | DDB0232433 | CDS | 577637 | 1992 | - | 0.270582 |
ddx56 | DDB_G0280407 | ortholog of H. sapiens DDX56 and S. cerevisiae DBP9 (Dead Box Protein 9) involved in biogenesis of the 60S ribosomal subunit | DDB0232430 | CDS | 3312082 | 2058 | + | 0.266764 |
ddx6 | DDB_G0291804 | ortholog of H. sapiens DDX6 and S. cerevisiae DHH1 (DExDH-box Helicase) | DDB0232433 | CDS | 773358 | 1272 | + | 0.367925 |
denr | DDB_G0279677 | conserved protein contains a translation initiation factor SUI1 domain | DDB0232430 | CDS | 2428511 | 675 | - | 0.29037 |
dgat2 | DDB_G0290279 | conserved diglyceride acyltransferase most similar to U. ramanniana DGAT2B and H. sapiens DGAT2 catalyzing the reaction: acyl-CoA 12-diacylglycerol CoA triacylglycerol | DDB0232432 | CDS | 3856720 | 993 | - | 0.300101 |
dimt1l | DDB_G0283789 | essential protein that dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle in S. cerevisiae | DDB0232431 | CDS | 1107655 | 945 | + | 0.285714 |
dph1 | DDB_G0284257 | ortholog to the conserved DPH1 which in S. cerevisiae is required for synthesis of diphthamide a modified histidine residue of translation elongation factor 2 | DDB0232431 | CDS | 1781348 | 1419 | - | 0.319239 |
dph2 | DDB_G0295687 | similar to the conserved DPH2 which in S. cerevisiae is required for synthesis of diphthamide a modified histidine residue of translation elongation factor 2 | DDB0232430 | CDS | 2638120 | 1767 | + | 0.24335 |
dph5 | DDB_G0276115 | ortholog to the conserved DPH5 a methyltransferase which in S. cerevisiae is required for synthesis of diphthamide a modified histidine residue of translation elongation factor 2 | DDB0232429 | CDS | 6268498 | 822 | + | 0.306569 |
drpp21 | DDB_G0290281 | ortholog of RPR2 a subunit of nuclear RNase P which cleaves tRNA precursors to generate mature 5' ends | DDB0232432 | CDS | 3858234 | 675 | - | 0.185185 |
drpp30 | DDB_G0269980 | DDB0232428 | CDS | 3962023 | 1101 | + | 0.288828 | |
dtd | DDB_G0291273 | hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr) in yeast substrate specifity may be broader | DDB0232433 | CDS | 40029 | 456 | + | 0.300439 |
dus1l | DDB_G0278803 | ortholog of S. cerevisiae DUS1 and the animal DUS1L catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of tRNAs | DDB0232430 | CDS | 1208252 | 1308 | + | 0.323395 |
dus2l | DDB_G0283877 | ortholog of S. cerevisiae SMM1 and the animal DUS2L catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of tRNAs | DDB0232431 | CDS | 1134008 | 1209 | + | 0.276261 |
dus3l | DDB_G0292686 | ortholog of S. cerevisiae DUS3 and the animal DUS3L catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of tRNAs | DDB0232433 | CDS | 1949203 | 2016 | + | 0.291171 |
dus4l | DDB_G0291360 | ortholog of S. cerevisiae DUS4 and the animal DUS4L catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of tRNAs | DDB0232433 | CDS | 180987 | 1035 | - | 0.282126 |
eIF1 | DDB_G0274239 | EIF1SUI1 ortholog the eukaryotic initiation factor 1 involved in recognition of the initiator codon | DDB0232429 | CDS | 4232211 | 333 | - | 0.336336 |
eIF1a | DDB_G0278205 | EIF1AX (eukaryotic initiation factor 1A X-linked) and EIF1AY (eukaryotic initiation factor 1A Y-linked) homolog | DDB0232430 | CDS | 473374 | 426 | - | 0.335681 |
eIF4e | DDB_G0268574 | EIF4E ortholog the eukaryotic initiation factor 4E recognizes and binds the RNA cap during protein synthesis | DDB0232428 | CDS | 1556730 | 753 | + | 0.310757 |
eIF4e3 | DDB_G0270406 | EIF4E3 ortholog the eukaryotic initiation factor 4E member 3 recognizes and binds the RNA cap during protein synthesis | DDB0232428 | CDS | 4795840 | 2442 | - | 0.28706 |
eIF5 | DDB_G0286753 | EIF5 ortholog the eukaryotic initiation factor 5 catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex | DDB0232431 | CDS | 4930004 | 1182 | + | 0.337563 |
eIF5b | DDB_G0278815 | EIF5B ortholog the eukaryotic initiation factor 5B promotes the binding of tRNA to the ribosome | DDB0232430 | CDS | 1232003 | 3138 | - | 0.360102 |
eIF6 | DDB_G0276493 | prevents 60S and 40S ribosomal subunits to form the 80S ribosome by binding to the 60S subunit in Dictyosteliium nutrition uptake stimulates gene expression | DDB0232429 | CDS | 6856691 | 735 | - | 0.361905 |
eRF3 | DDB_G0277919 | DDB0232430 | CDS | 855258 | 1674 | - | 0.390681 | |
efa1B | DDB_G0284035 | DDB0232431 | CDS | 1535647 | 651 | + | 0.391705 | |
efaAI | DDB_G0269134 | elongation factor 1 alpha one of two genes coding for the same protein binds and bundles F-actin expressed in prespore cells | DDB0232428 | CDS | 2795744 | 1362 | - | 0.432452 |
efaAII | DDB_G0269136 | elongation factor 1 alpha one of two genes coding for the same protein binds and bundles F-actin | DDB0232428 | CDS | 2431765 | 1362 | - | 0.417768 |
efbA | DDB_G0288373 | translocates peptidyl-tRNA from the aminoacyl site to the peptidyl site on the ribosome during protein synthesis null mutants still synthesis protein suggesting that EF-2b (cinC) is the real translation elongation gector | DDB0232432 | CDS | 1470619 | 2520 | + | 0.418651 |
eftud1 | DDB_G0279689 | DDB0232430 | CDS | 2446020 | 3495 | - | 0.303577 | |
eftud2 | DDB_G0283359 | highly conserved U5 small nuclear ribonucleoprotein subunit that is similar to elongation factor Tu ortholog of yeast SNU114 and human EFTUD2 | DDB0232431 | CDS | 569125 | 3057 | - | 0.328099 |
eif2b1 | DDB_G0288961 | DDB0232432 | CDS | 2146739 | 966 | + | 0.295031 | |
eif2b2 | DDB_G0291271 | DDB0232433 | CDS | 38541 | 1167 | - | 0.288775 | |
eif2b3 | DDB_G0290693 | EIF2B3 ortholog the eukaryotic initiation factor 2B gamma subunit guanyl nucleotide exchange factor for eIF2 defects are linked to leukoencephalopathy with vanishing white matter | DDB0232432 | CDS | 4424632 | 1323 | + | 0.265306 |
eif2b4 | DDB_G0290759 | ortholog of human EIF2B4 delta subunit of the translation initiation factor eIF2B the guanine-nucleotide exchange factor for eIF2 | DDB0232432 | CDS | 4569158 | 1860 | + | 0.317204 |
eif2b5 | DDB_G0283163 | EIF2B5 ortholog the eukaryotic initiation factor 2B epsilon subunit guanyl nucleotide exchange factor for eIF2 defects are linked to leukoencephalopathy with vanishing white matter | DDB0232431 | CDS | 349612 | 2124 | - | 0.303672 |
eif2s1 | DDB_G0271862 | EIF2S1 ortholog the eukaryotic initiation factor 2 alpha subunit in human binds to the 40S ribosome and to the mRNA for form a preinitiation complex contains an S1 RNA-binding domain characteristic of eIF2alpha | DDB0232429 | CDS | 944209 | 1026 | + | 0.334308 |
eif2s2 | DDB_G0282035 | EIF2S2 ortholog the eukaryotic initiation factor 2 beta subunit in human binds to the 40S ribosome and to the mRNA for form a preinitiation complex complex composed of 3 subunits | DDB0232430 | CDS | 5298628 | 954 | - | 0.348008 |
eif2s3 | DDB_G0278967 | DDB0232430 | CDS | 1529248 | 1383 | - | 0.348518 | |
eif5a | DDB_G0284861 | DDB0232431 | CDS | 2766075 | 480 | + | 0.395833 | |
elp | DDB_G0287987 | similar to elongation factor 2 (EF-2) but lacks the EF-Tu binding domain 2 and EF-G domain EF-2 translocates peptidyl-tRNA from the aminoacyl site to the peptidyl site on the ribosome during protein synthesis | DDB0232432 | CDS | 934832 | 2520 | + | 0.271429 |
erf1 | DDB_G0288613 | class I release factor of the translation termination machinery in eukaryotes with the universal genetic code predicted to recognizes all stop codons (UAA UAG and UGA) | DDB0232432 | CDS | 1753244 | 1326 | - | 0.361991 |
exdl2A | DDB_G0278079 | very similar to mammalian exonuclease 3'-5' domain-like-containing protein 2 (EXDL2) the upstream Dictyostelium gene is very similar | DDB0232430 | CDS | 242964 | 2157 | + | 0.243394 |
exdl2B | DDB_G0278593 | very similar to mammalian exonuclease 3'-5' domain-like-containing protein 2 (EXDL2) the downstream Dictyostelium gene is very similar | DDB0232430 | CDS | 240471 | 2061 | + | 0.246482 |
exosc10 | DDB_G0271572 | ortholog of mammalian EXOSC10 and yeast RRP6 exonuclease component of the nuclear exosome in human part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance | DDB0232429 | CDS | 601251 | 3588 | - | 0.298495 |
fam49 | DDB_G0272190 | DDB0232429 | CDS | 1409267 | 948 | - | 0.337553 | |
fbl | DDB_G0269878 | utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA | DDB0232428 | CDS | 3783828 | 1005 | + | 0.418905 |
fsjA | DDB_G0280483 | ortholog of the RrmJFtsJ ribosomal RNA methyltransferase a well conserved heat shock protein present in prokaryotes archaea and eukaryotes responsible for methylating 23 S rRNA | DDB0232430 | CDS | 3432872 | 813 | - | 0.264453 |
fsjB | DDB_G0271998 | RrmJFtsJ ribosomal RNA methyltransferase family member well conserved heat shock proteins present in prokaryotes archaea and eukaryotes similar to S. cerevisiae MRM2 required for methylation of U(2791) in 21S rRNA | DDB0232429 | CDS | 1135748 | 1923 | - | 0.24753 |
fsjC | DDB_G0284945 | RrmJFtsJ ribosomal RNA methyltransferase family member well conserved heat shock proteins present in prokaryotes archaea and eukaryotes this is the ortholog of H. sapiens FTSJ3 involved in rRNA processing and 60S ribosomal subunit maturation (yeast) | DDB0232431 | CDS | 2672551 | 2502 | - | 0.321343 |
gatA | DDB_G0286875 | catalyzes the reaction ATP L-glutamyl-tRNA(Gln) L-glutamine ADP phosphate L-glutaminyl-tRNA(Gln) L-glutamate | DDB0232431 | CDS | 5011319 | 1653 | + | 0.260738 |
gatB | DDB_G0268776 | catalyzes the reaction ATP L-glutamyl-tRNA(Gln) L-glutamine ADP phosphate L-glutaminyl-tRNA(Gln) L-glutamate | DDB0232428 | CDS | 2075252 | 1617 | + | 0.260359 |
gfm1 | DDB_G0270482 | DDB0232428 | CDS | 2561561 | 2205 | + | 0.329252 | |
gfm2 | DDB_G0267766 | DDB0232428 | CDS | 806804 | 2298 | - | 0.29765 | |
glnS | DDB_G0289481 | induced by cycloheximide catalyzes the reaction ATP L-glutamine tRNAGln AMP diphosphate L-glutaminyl-tRNAGln | DDB0232432 | CDS | 2857147 | 2340 | + | 0.335043 |
gluS | DDB_G0287467 | catalyzes the reaction ATP L-glutamate tRNAGlu AMP diphosphate L-glutamyl-tRNAGlu | DDB0232432 | CDS | 295392 | 2295 | - | 0.34902 |
glyS | DDB_G0284583 | catalyzes the reaction ATP glycine tRNAGly AMP diphosphate glycyl-tRNAGly | DDB0232431 | CDS | 2181616 | 2037 | + | 0.354934 |
gmppA | DDB_G0271858 | catalyzes the reaction GTP alpha-D-mannose 1-phosphate diphosphate GDP-mannose | DDB0232429 | CDS | 932853 | 1239 | - | 0.305892 |
gmppB | DDB_G0287619 | catalyzes the reaction GTP alpha-D-mannose 1-phosphate diphosphate GDP-mannose | DDB0232432 | CDS | 482074 | 1080 | + | 0.324074 |
hbs1 | DDB_G0283769 | DDB0232431 | CDS | 1138835 | 2190 | + | 0.306393 | |
helA | DDB_G0292992 | DDB0232433 | CDS | 2367392 | 3276 | + | 0.291209 | |
helB1 | DDB_G0275443 | conserved RNA helicase S. cerevisiae ortholog PRP5 is necessary for pre-spliceosome formation | DDB0232429 | CDS | 5780689 | 3456 | - | 0.335938 |
helB2 | DDB_G0277857 | conserved RNA helicase S. cerevisiae ortholog PRP28 is involved in RNA isomerization at the 5' splice site | DDB0232430 | CDS | 776296 | 2505 | + | 0.335729 |
helC | DDB_G0281553 | DDB0232430 | CDS | 4949807 | 1398 | + | 0.286838 | |
hisS | DDB_G0274159 | catalyzes the reaction ATP L-histidine tRNAHis AMP diphosphate L-histidyl-tRNAHis | DDB0232429 | CDS | 4879244 | 1446 | + | 0.342324 |
ifdA | DDB_G0269146 | similar to eukaryotic translation initiation factor 4A isoform 2 | DDB0232428 | CDS | 2640023 | 1188 | + | 0.393939 |
ifkA | DDB_G0272837 | eukaryotic translation initiation factor 2 alpha (eIF2alpha) kinase putative protein serinethreonine kinase contains two kinase domains and a HisRS domain N-terminal kinase domain related to STE group C-terminal kinase domain related to GCN2 subfamily | DDB0232429 | CDS | 2194537 | 6777 | + | 0.273425 |
ifkB | DDB_G0276829 | putative eukaryotic translation initiation factor 2 alpha (eIF2alpha) kinase putative protein serinethreonine kinase related to the GCN2 family of protein kinases contains a kinase domain and a HisRS domain | DDB0232429 | CDS | 7412574 | 4077 | + | 0.297768 |
ifkC | DDB_G0276043 | putative eukaryotic translation initiation factor 2 alpha (eIF2alpha) kinase putative protein serinethreonine kinase contains the RWD domain found in GCN2 kinases and histidyl tRNA synthetases related to the GCN2 family of protein kinases that phosphorylate the alpha subunit of eIF2 | DDB0232429 | CDS | 6510818 | 5103 | - | 0.277288 |
ileS | DDB_G0278293 | catalyzes the reaction ATP L-isoleucine tRNAIle AMP diphosphate L-isoleucyl-tRNAIle | DDB0232430 | CDS | 632971 | 3204 | - | 0.36236 |
imp3 | DDB_G0278983 | ortholog of the conserved eukaryotic IMP3 component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP4 and MPP10 | DDB0232430 | CDS | 1474915 | 534 | + | 0.275281 |
imp4 | DDB_G0302418 | ortholog of the conserved eukaryotic IMP4 component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP3 and MPP10 | DDB0232430 | CDS | 4835697 | 861 | + | 0.297329 |
ints11 | DDB_G0278189 | ortholog of integrator complex subunit 1 component of a multiprotein mediator of small nuclear RNA processing | DDB0232430 | CDS | 423737 | 2235 | + | 0.273825 |
ints9 | DDB_G0282473 | ortholog of integrator complex subunit 9 component of a multiprotein mediator of small nuclear RNA processing | DDB0232430 | CDS | 5815575 | 2139 | - | 0.255259 |
iptA | DDB_G0277215 | similar to plant pathogenic bacteria Ipt proteins involved in cytokinin synthesis IPP transferases modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) | DDB0232429 | CDS | 7652688 | 852 | - | 0.252347 |
iptB | DDB_G0291528 | DDB0232433 | CDS | 482754 | 1569 | + | 0.203952 | |
iptC-1 | DDB_G0273039 | IPP transferases modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) there is a second copy of this gene | DDB0232429 | CDS | 2360286 | 1242 | + | 0.223027 |
iptC-2 | DDB_G0274017 | IPP transferases modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) there is a second copy of this gene | DDB0232429 | CDS | 3669962 | 1242 | - | 0.223027 |
leuS | DDB_G0285451 | catalyzes the reaction ATP L-leucine tRNALeu AMP diphosphate L-leucyl-tRNALeu | DDB0232431 | CDS | 3240792 | 3177 | + | 0.352849 |
lysS | DDB_G0281437 | catalyzes the reaction ATP L-lysine tRNALys AMP diphosphate L-lysyl-tRNALys | DDB0232430 | CDS | 4498697 | 1656 | - | 0.384058 |
malaS | DDB_G0275655 | catalyzes the reaction ATP L-alanine tRNAAla AMP diphosphate L-alanyl-tRNAAla | DDB0232429 | CDS | 5835586 | 2799 | + | 0.287245 |
map1d | DDB_G0280127 | releases N-terminal amino acids preferentially methionine from peptides and arylamides ortholog of the human mitochondrial MAPD1 | DDB0232430 | CDS | 2983397 | 1215 | - | 0.283951 |
maspS | DDB_G0270152 | catalyzes the reaction ATP L-aspartate tRNAAsp AMP diphosphate L-aspartyl-tRNAAsp | DDB0232428 | CDS | 4321908 | 2079 | - | 0.292929 |
mcysS | DDB_G0277295 | catalyzes the reaction ATP L-cysteine tRNACys AMP diphosphate L-cysteinyl-tRNACys | DDB0232429 | CDS | 7755927 | 1752 | + | 0.250571 |
metS | DDB_G0279113 | catalyzes the reaction ATP L-methionine tRNAMet AMP diphosphate L-methionyl-tRNAMet | DDB0232430 | CDS | 1648404 | 2211 | - | 0.341022 |
metap1 | DDB_G0279433 | catalyzes the release of N-terminal amino acids preferentially methionine from peptides and arylamides | DDB0232430 | CDS | 2043258 | 1104 | - | 0.320652 |
metap2 | DDB_G0270264 | catalyzes the release of N-terminal amino acids preferentially methionine from peptides and arylamides | DDB0232428 | CDS | 4531797 | 1311 | + | 0.348589 |
mgluS | DDB_G0271906 | catalyzes the reaction ATP L-glutamate tRNAGlu AMP diphosphate L-glutamyl-tRNAGlu | DDB0232429 | CDS | 1062208 | 1755 | - | 0.267236 |
mhisS | DDB_G0269822 | catalyzes the reaction ATP L-histidine tRNAHis AMP diphosphate L-histidyl-tRNAHis similar to bacterial histidine-tRNA ligase | DDB0232428 | CDS | 3669575 | 1506 | - | 0.249004 |
mileS | DDB_G0293030 | catalyzes the reaction ATP L-isoleucine tRNAIle AMP diphosphate L-isoleucyl-tRNAIle | DDB0232433 | CDS | 2348091 | 3105 | - | 0.287601 |
mleuS | DDB_G0291346 | catalyzes the reaction ATP L-leucine tRNALeu AMP diphosphate L-leucyl-tRNALeu | DDB0232433 | CDS | 154547 | 2823 | + | 0.29791 |
mlysS | DDB_G0286517 | catalyzes the reaction ATP L-lysine tRNALys AMP diphosphate L-lysyl-tRNALys | DDB0232431 | CDS | 4584316 | 1848 | + | 0.267316 |
mmetS | DDB_G0285759 | catalyzes the reaction ATP L-methionine tRNAMet AMP diphosphate L-methionyl-tRNAMet | DDB0232431 | CDS | 3423740 | 1728 | + | 0.305556 |
mpheS | DDB_G0274371 | catalyzes the reaction ATP L-phenylalanine tRNAPhe AMP diphosphate L-phenylalanyl-tRNAPhe | DDB0232429 | CDS | 3786786 | 1365 | - | 0.276923 |
mpp10 | DDB_G0279245 | ortholog of H. sapiens MPHOSPH10 and S. cerevisiae MPP10 protein component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP3 IMP4 | DDB0232430 | CDS | 1824604 | 2298 | + | 0.27154 |
mproS | DDB_G0276079 | catalyzes the reaction ATP L-proline tRNAPro AMP diphosphate L-prolyl-tRNAPro | DDB0232429 | CDS | 6422563 | 2025 | + | 0.25284 |
mrpl13 | DDB_G0274959 | DDB0232429 | CDS | 4669717 | 684 | + | 0.312865 | |
mrpl15 | DDB_G0284405 | DDB0232431 | CDS | 1955406 | 756 | + | 0.308201 | |
mrpl17 | DDB_G0281435 | DDB0232430 | CDS | 4497695 | 549 | + | 0.29326 | |
mrpl21 | DDB_G0288799 | DDB0232432 | CDS | 1981150 | 519 | - | 0.265896 | |
mrpl22 | DDB_G0279519 | DDB0232430 | CDS | 2194197 | 714 | - | 0.285714 | |
mrpl27 | DDB_G0278889 | DDB0232430 | CDS | 1343635 | 429 | + | 0.298368 | |
mrpl3 | DDB_G0288983 | DDB0232432 | CDS | 2204231 | 1056 | - | 0.321023 | |
mrpl33 | DDB_G0278023 | DDB0232430 | CDS | 172946 | 192 | - | 0.265625 | |
mrpl34 | DDB_G0295825 | DDB0232430 | CDS | 4856414 | 510 | - | 0.252941 | |
mrps10 | DDB_G0279855 | DDB0232430 | CDS | 2553750 | 396 | - | 0.318182 | |
mrps17 | DDB_G0277195 | DDB0232429 | CDS | 7731826 | 384 | - | 0.273438 | |
mrt4 | DDB_G0276411 | DDB0232429 | CDS | 6846542 | 672 | - | 0.282738 | |
mserS | DDB_G0267604 | catalyzes the reaction ATP L-serine tRNASer AMP diphosphate L-seryl-tRNASer | DDB0232428 | CDS | 406648 | 1578 | - | 0.299113 |
mtrpS | DDB_G0274567 | catalyzes the reaction ATP L-tryptophan tRNATrp AMP diphosphate L-tryptophan-tRNAThr similar to bacterial tryptophan-tRNA ligases | DDB0232429 | CDS | 3980092 | 1134 | - | 0.261023 |
mtyrS | DDB_G0279715 | catalyzes the reaction ATP L-Tyrosine tRNATyr AMP diphosphate L-tyrosyl-tRNATyr similar to bacterial tyrosine-tRNA ligases | DDB0232430 | CDS | 2475392 | 1449 | - | 0.287095 |
nhp2l1 | DDB_G0282243 | ortholog of human NHP2L1 which is believed to play a role in spliceosome assembly similar to ribosomal protein L7AE but is not likely to be a ribosomal protein | DDB0232430 | CDS | 5564223 | 390 | + | 0.348718 |
nip7 | DDB_G0295477 | ortholog of the conserved NIP7 nucleolar protein that is required for 60S ribosome subunit biogenesis contains a PUA domain | DDB0232429 | CDS | 615393 | 540 | + | 0.272222 |
nmd3 | DDB_G0271306 | conserved NMD3 protein which in S. cerevisiae is involved in the nuclear export of the large ribosomal subunit | DDB0232429 | CDS | 129822 | 1593 | - | 0.323917 |
nol1 | DDB_G0281685 | possible RNA methyltransferase ortholog of H. sapiens NOL1 and S. cerevisiae NOP2 | DDB0232430 | CDS | 4810538 | 1944 | - | 0.326646 |
nol5a | DDB_G0285679 | ortholog of H. sapiens NOL5A and S. cerevisiae SIK1 SIK1 is a component of the box CD snoRNP complex involved in rRNA processing | DDB0232431 | CDS | 3582121 | 1623 | + | 0.325323 |
nola1 | DDB_G0279013 | component of the HACA small nucleolar ribonucleoprotein (HACA snoRNP) complex required for pre-mRNA processing and pseudouridylation | DDB0232430 | CDS | 1514463 | 693 | + | 0.47619 |
nola2 | DDB_G0289699 | component of the HACA small nucleolar ribonucleoprotein (HACA snoRNP) complex required for pre-mRNA processing and pseudouridylation | DDB0232432 | CDS | 3120417 | 435 | + | 0.303448 |
nola3 | DDB_G0288347 | component of the HACA small nucleolar ribonucleoprotein (HACA snoRNP) complex required for pre-mRNA processing and pseudouridylation | DDB0232432 | CDS | 1416040 | 195 | + | 0.323077 |
nola4 | DDB_G0281933 | ortholog of human DKC1 (DysKeratosis Congenita 1) and yeast CBF5 (Centromere Binding Factor 5) component of the HACA small nucleolar ribonucleoprotein (HACA snoRNP) complex required for pre-mRNA processing and pseudouridylation | DDB0232430 | CDS | 5161271 | 1623 | - | 0.370302 |
nop58 | DDB_G0268098 | ortholog of human and S. pombe nucleolar protein 58 members of this family are involved in a variety of functions during pre-mRNA splicing | DDB0232428 | CDS | 1450677 | 1917 | - | 0.344288 |
ola1 | DDB_G0268758 | belongs to the RAS-like GTPase superfamily ortholog of human OLA1 | DDB0232428 | CDS | 2048942 | 1182 | + | 0.315567 |
phesA | DDB_G0287141 | catalyzes the reaction ATP L-phenylalanine tRNAPhe AMP diphosphate L-phenylalanyl-tRNAPhe in S. cerevisiae acts as a tetramer composed of two alpha and two beta subunits | DDB0232431 | CDS | 5374001 | 1464 | + | 0.295082 |
phesB | DDB_G0277303 | catalyzes the reaction ATP L-phenylalanine tRNAPhe AMP diphosphate L-phenylalanyl-tRNAPhe in S. cerevisiae acts as a tetramer composed of two alpha and two beta subunits | DDB0232429 | CDS | 7623909 | 1854 | - | 0.302589 |
pop4 | DDB_G0288543 | DDB0232432 | CDS | 1668067 | 759 | - | 0.258235 | |
pop5 | DDB_G0291662 | DDB0232433 | CDS | 281774 | 516 | - | 0.24031 | |
prfA | DDB_G0283175 | required for the termination of protein biosynthesis class I release factors bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide mediates UAA and UAG-dependent termination in prokaryotes | DDB0232431 | CDS | 360952 | 1293 | + | 0.329466 |
prfB | DDB_G0288835 | required for the termination of protein biosynthesis class I release factors bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide mediates UAA and UGA-dependent termination in prokaryotes | DDB0232432 | CDS | 2047432 | 1275 | + | 0.28549 |
prlA | DDB_G0282361 | DDB0232430 | CDS | 5825075 | 1158 | + | 0.358377 | |
proS | DDB_G0284197 | catalyzes the reaction ATP L-proline tRNAPro AMP diphosphate L-prolyl-tRNAPro | DDB0232431 | CDS | 1680128 | 1647 | + | 0.375228 |
prpf31 | DDB_G0289595 | component of the U4U6-U5 snRNP complex defects in human PRPF31 are the cause of retinitis pigmentosa 11 (RP11) | DDB0232432 | CDS | 2984110 | 1383 | - | 0.295734 |
pus1 | DDB_G0290987 | ortholog of S. cerevisiae PUS1a tRNA:pseudouridine synthase that introduces pseudouridines at positions 26-28 34-36 65 and 67 of tRNA nuclear protein that appears to be involved in tRNA export also acts on U2 snRNA | DDB0232432 | CDS | 4857087 | 1791 | - | 0.289224 |
pus3 | DDB_G0288909 | similar to S. cerevisiae pus3 which introduces pseudouridines at position 38 or 39 in tRNA | DDB0232432 | CDS | 2110038 | 1476 | + | 0.25271 |
qtrt1 | DDB_G0291802 | catalyzes the reaction [tRNA]-guanine queuine [tRNA]-queuine guanine | DDB0232433 | CDS | 770747 | 1344 | - | 0.385417 |
rab_ps2 | DDB_G0275101 | putative pseudogene Rab family protein | DDB0232429 | CDS | 5064677 | 321 | - | 0.286604 |
rlp24 | DDB_G0272789 | ortholog of the mammalian C15orf15 gene and the S. cerevisiae RLP24 protein which is involved in the biogenesis of the 60S ribosomal subunit and at the end of biogenesis is likely to be exchanged for its ribosomal homologue rpl24 | DDB0232429 | CDS | 2178487 | 495 | - | 0.290909 |
rpl10 | DDB_G0288273 | DDB0232432 | CDS | 1312496 | 654 | - | 0.408257 | |
rpl10a | DDB_G0276871 | DDB0232429 | CDS | 7540396 | 654 | + | 0.382263 | |
rpl11 | DDB_G0279189 | DDB0232430 | CDS | 1766422 | 609 | - | 0.403941 | |
rpl12 | DDB_G0288295 | DDB0232432 | CDS | 1359447 | 501 | + | 0.411178 | |
rpl13 | DDB_G0291870 | DDB0232433 | CDS | 852689 | 630 | + | 0.420635 | |
rpl13a | DDB_G0275881 | DDB0232429 | CDS | 5876511 | 564 | + | 0.423759 | |
rpl14 | DDB_G0277975 | DDB0232430 | CDS | 87206 | 474 | + | 0.413502 | |
rpl15-1 | DDB_G0272893 | protein component of the large (60S) ribosomal subunit there is a second copy of this gene | DDB0232429 | CDS | 2395262 | 618 | - | 0.435275 |
rpl15-2 | DDB_G0273983 | protein component of the large (60S) ribosomal subunitthere is a second copy of this gene | DDB0232429 | CDS | 3635653 | 618 | + | 0.435275 |
rpl17 | DDB_G0285277 | DDB0232431 | CDS | 3049805 | 543 | + | 0.412523 | |
rpl18 | DDB_G0279997 | DDB0232430 | CDS | 2837555 | 546 | + | 0.380952 | |
rpl18a | DDB_G0285881 | DDB0232431 | CDS | 3775456 | 516 | + | 0.395349 | |
rpl19 | DDB_G0281565 | DDB0232430 | CDS | 4825161 | 561 | + | 0.4082 | |
rpl21 | DDB_G0279387 | DDB0232430 | CDS | 1751733 | 483 | - | 0.434783 | |
rpl23 | DDB_G0290315 | DDB0232432 | CDS | 3946402 | 411 | - | 0.420925 | |
rpl23a | DDB_G0293502 | DDB0232433 | CDS | 2967908 | 510 | + | 0.4 | |
rpl24 | DDB_G0280229 | DDB0232430 | CDS | 3141943 | 384 | + | 0.393229 | |
rpl26 | DDB_G0283741 | DDB0232431 | CDS | 1048980 | 420 | + | 0.390476 | |
rpl27 | DDB_G0271298 | DDB0232429 | CDS | 140424 | 435 | - | 0.425287 | |
rpl27a | DDB_G0292388 | DDB0232433 | CDS | 1592145 | 447 | - | 0.411633 | |
rpl3 | DDB_G0291862 | protein component of the large (60S) ribosomal subunit ribosomal protein L3 homolog | DDB0232433 | CDS | 954736 | 1197 | - | 0.404344 |
rpl30 | DDB_G0270380 | DDB0232428 | CDS | 4730345 | 339 | - | 0.362832 | |
rpl31 | DDB_G0279061 | DDB0232430 | CDS | 1578225 | 336 | - | 0.407738 | |
rpl32 | DDB_G0271976 | DDB0232429 | CDS | 1095789 | 402 | + | 0.405473 | |
rpl34 | DDB_G0286389 | DDB0232431 | CDS | 4400738 | 369 | - | 0.365854 | |
rpl35 | DDB_G0288349 | DDB0232432 | CDS | 1418812 | 381 | - | 0.39895 | |
rpl35a | DDB_G0270424 | DDB0232428 | CDS | 4849685 | 318 | + | 0.389937 | |
rpl36 | DDB_G0271668 | DDB0232429 | CDS | 733224 | 318 | - | 0.399371 | |
rpl36a | DDB_G0270984 | DDB0232428 | CDS | 3772004 | 312 | + | 0.394231 | |
rpl37 | DDB_G0285971 | DDB0232431 | CDS | 3886590 | 276 | + | 0.42029 | |
rpl37A | DDB_G0281093 | DDB0232430 | CDS | 4045953 | 276 | + | 0.431159 | |
rpl39 | DDB_G0302511 | DDB0232432 | CDS | 657459 | 156 | - | 0.333333 | |
rpl4 | DDB_G0277803 | protein component of the large (60S) ribosomal subunit ribosomal protein L4 homolog | DDB0232429 | CDS | 8431684 | 1110 | + | 0.443243 |
rpl5 | DDB_G0278539 | protein component of the large (60S) ribosomal subunit ribosomal protein L5 homolog | DDB0232430 | CDS | 1039561 | 879 | - | 0.416382 |
rpl6 | DDB_G0292460 | protein component of the large (60S) ribosomal subunit ribosomal protein L6 homolog | DDB0232433 | CDS | 1676096 | 711 | + | 0.410689 |
rpl7 | DDB_G0276441 | DDB0232429 | CDS | 6956284 | 741 | - | 0.395412 | |
rpl7a | DDB_G0277629 | protein component of the large (60S) ribosomal subunit ribosomal protein L7a homolog | DDB0232429 | CDS | 8280728 | 858 | - | 0.405594 |
rpl8 | DDB_G0274113 | protein component of the large (60S) ribosomal subunit ribosomal protein L8 homolog | DDB0232429 | CDS | 4593609 | 768 | - | 0.440104 |
rpl9 | DDB_G0278959 | protein component of the large (60S) ribosomal subunit ribosomal protein L9 homolog | DDB0232430 | CDS | 1387306 | 567 | - | 0.368607 |
rplP0 | DDB_G0286501 | DDB0232431 | CDS | 4590677 | 918 | - | 0.418301 | |
rplP1 | DDB_G0277907 | DDB0232430 | CDS | 1026839 | 342 | + | 0.453216 | |
rplP2 | DDB_G0283393 | DDB0232431 | CDS | 661727 | 321 | - | 0.485981 | |
rplp1B | DDB_G0287995 | DDB0232432 | CDS | 942400 | 303 | + | 0.475248 | |
rps10 | DDB_G0286117 | protein component of the small (40S) ribosomal subunit highly expressed in vegetative cells and in early development | DDB0232431 | CDS | 4072416 | 465 | - | 0.415054 |
rps11 | DDB_G0282601 | protein component of the small (40S) ribosomal subunit ribosomal protein S11 homolog | DDB0232430 | CDS | 5991308 | 468 | + | 0.40812 |
rps12 | DDB_G0284237 | protein component of the small (40S) ribosomal subunit ribosomal protein S12 homolog | DDB0232431 | CDS | 1729814 | 411 | - | 0.413625 |
rps13 | DDB_G0284533 | protein component of the small (40S) ribosomal subunit ribosomal protein S13 homolog | DDB0232431 | CDS | 2127182 | 456 | - | 0.388158 |
rps14 | DDB_G0291526 | protein component of the small (40S) ribosomal subunit ribosomal protein S14 homolog | DDB0232433 | CDS | 481211 | 459 | - | 0.444444 |
rps15 | DDB_G0285561 | protein component of the small (40S) ribosomal subunit ribosomal protein S15 homolog | DDB0232431 | CDS | 3385002 | 435 | + | 0.402299 |
rps15a | DDB_G0276457 | protein component of the small (40S) ribosomal subunit ribosomal protein S15a homolog | DDB0232429 | CDS | 6809160 | 393 | + | 0.391858 |
rps16 | DDB_G0284093 | protein component of the small (40S) ribosomal subunit ribosomal protein S16 homolog | DDB0232431 | CDS | 1558362 | 444 | + | 0.387387 |
rps17 | DDB_G0290141 | protein component of the small (40S) ribosomal subunit ribosomal protein S17 homolog | DDB0232432 | CDS | 3706333 | 408 | + | 0.377451 |
rps18 | DDB_G0276415 | protein component of the small (40S) ribosomal subunit ribosomal protein S18 homolog | DDB0232429 | CDS | 6891141 | 465 | + | 0.382796 |
rps19 | DDB_G0279207 | protein component of the small (40S) ribosomal subunit ribosomal protein S19 homolog | DDB0232430 | CDS | 1760514 | 447 | + | 0.434004 |
rps2 | DDB_G0293742 | protein component of the small (40S) ribosomal subunit expressed in vegetative cells and in prestalk cells during culmination | DDB0232433 | CDS | 3277669 | 798 | + | 0.45614 |
rps20 | DDB_G0278429 | protein component of the small (40S) ribosomal subunit ribosomal protein S20 homolog | DDB0232430 | CDS | 871775 | 375 | - | 0.405333 |
rps23 | DDB_G0272250 | protein component of the small (40S) ribosomal subunit ribosomal protein S23 homolog | DDB0232429 | CDS | 1373618 | 432 | + | 0.416667 |
rps24 | DDB_G0275473 | protein component of the small (40S) ribosomal subunit ribosomal protein S24 homolog | DDB0232429 | CDS | 6089719 | 381 | - | 0.406824 |
rps25 | DDB_G0271148 | protein component of the small (40S) ribosomal subunit ribosomal protein S25 homolog | DDB0232429 | CDS | 133239 | 333 | - | 0.399399 |
rps26 | DDB_G0281677 | protein component of the small (40S) ribosomal subunit ribosomal protein S26 homolog | DDB0232430 | CDS | 4801949 | 339 | - | 0.430678 |
rps27 | DDB_G0277635 | protein component of the small (40S) ribosomal subunit ribosomal protein S27 homolog | DDB0232429 | CDS | 8305176 | 258 | + | 0.406977 |
rps28 | DDB_G0285597 | protein component of the small (40S) ribosomal subunit ribosomal protein S28 homolog | DDB0232431 | CDS | 3428530 | 219 | - | 0.429224 |
rps29 | DDB_G0272308 | protein component of the small (40S) ribosomal subunit ribosomal protein S29 homolog | DDB0232429 | CDS | 1258878 | 168 | + | 0.446429 |
rps3 | DDB_G0293000 | DDB0232433 | CDS | 2556040 | 657 | - | 0.418569 | |
rps3a | DDB_G0277345 | DDB0232429 | CDS | 7795600 | 822 | + | 0.417275 | |
rps4 | DDB_G0272825 | protein component of the small (40S) ribosomal subunit highly expressed in vegetative cells and in early development | DDB0232429 | CDS | 2019070 | 804 | - | 0.422886 |
rps5 | DDB_G0286075 | DDB0232431 | CDS | 4031568 | 573 | + | 0.418848 | |
rps6 | DDB_G0280823 | DDB0232430 | CDS | 1442353 | 711 | + | 0.419128 | |
rps8 | DDB_G0291864 | DDB0232433 | CDS | 844628 | 636 | + | 0.418239 | |
rps9 | DDB_G0289877 | DDB0232432 | CDS | 3486480 | 558 | + | 0.40681 | |
rpsA | DDB_G0270316 | 40S ribosomal protein SA (p40) homolog belongs to the ribosomal protein S2P family contains ribosomal protein S2 domain | DDB0232428 | CDS | 4628419 | 738 | - | 0.415989 |
rrs1 | DDB_G0274521 | ortholog of S. cerevisiae RRS1 an essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis mouse homolog shows altered expression in Huntington's disease model mice | DDB0232429 | CDS | 4289980 | 954 | - | 0.303983 |
rsmJ | DDB_G0279305 | DDB0232430 | CDS | 1907472 | 579 | + | 0.219344 | |
sbds | DDB_G0272324 | orthlog of the human SBDS protein which is mutated in a majority of patients with Shwachman-Bodian-Diamond syndrome localizes to the pseudopodia in cAMP gradient | DDB0232429 | CDS | 1287157 | 825 | + | 0.299394 |
serS | DDB_G0272660 | catalyzes the reaction ATP L-serine tRNASer AMP diphosphate L-seryl-tRNASer | DDB0232429 | CDS | 2243539 | 1356 | + | 0.343658 |
tfb1m | DDB_G0286199 | DDB0232431 | CDS | 4166229 | 1458 | - | 0.268176 | |
thrS1 | DDB_G0288267 | catalyzes the reaction ATP L-threonine tRNAThr AMP diphosphate L-threonyl-tRNAThr | DDB0232432 | CDS | 1320046 | 2133 | - | 0.33849 |
thrS2 | DDB_G0274545 | catalyzes the reaction ATP L-threonine tRNAThr AMP diphosphate L-threonyl-tRNAThr | DDB0232429 | CDS | 4202893 | 2097 | - | 0.251311 |
tifA | DDB_G0269192 | similar to eukaryotic initiation factor 4A isoform 3 | DDB0232428 | CDS | 3537960 | 1218 | + | 0.316092 |
trmt61 | DDB_G0271512 | ortholog of the human TRM61 and yeast GCD14 which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA as a heterodimer with | DDB0232429 | CDS | 468500 | 939 | + | 0.286475 |
trmu | DDB_G0288979 | catalyzes the reaction: S-adenosyl-L-methionine tRNA S-adenosyl-L-homocysteine tRNA containing 5-methylaminomethyl-2-thiouridylate | DDB0232432 | CDS | 2201638 | 1356 | + | 0.266962 |
trpS | DDB_G0269454 | catalyzes the reaction ATP L-tryptophan tRNATrp AMP diphosphate L-tryptophan-tRNAThr | DDB0232428 | CDS | 2807320 | 1203 | - | 0.296758 |
tsfm | DDB_G0286399 | DDB0232431 | CDS | 4409316 | 1068 | + | 0.305243 | |
tsnax | DDB_G0284837 | ortholog of human TSNAX interacts with translin (TSN) may be involved in RNA metabolism | DDB0232431 | CDS | 2473632 | 855 | - | 0.247953 |
tufM | DDB_G0289593 | mitochondrial translation elongation factor Tu highly similar to bacterial elongation factor Tu | DDB0232432 | CDS | 2977521 | 1275 | - | 0.418039 |
tyrS | DDB_G0276721 | catalyzes the reaction ATP L-Tyrosine tRNATyr AMP diphosphate L-tyrosyl-tRNATyr | DDB0232429 | CDS | 7137404 | 1152 | - | 0.326389 |
uap56 | DDB_G0269932 | conserved splice factor that is required for the first ATP-dependent step in spliceosome assembly and for the interaction of U2 snRNP with the branchpoint the human ortholog (BAT1) forms a homodimer and interacts directly with | DDB0232428 | CDS | 3893359 | 1287 | - | 0.359751 |
ubqB | DDB_G0280755 | DDB0232430 | CDS | 3722395 | 387 | - | 0.372093 | |
ubqC | DDB_G0276765 | DDB0232429 | CDS | 7198772 | 465 | - | 0.372043 | |
valS1 | DDB_G0277733 | catalyzes the reaction ATP L-valine tRNAVal AMP diphosphate L-valyl-tRNAVal | DDB0232429 | CDS | 8402743 | 3219 | + | 0.352594 |
valS2 | DDB_G0288939 | catalyzes the reaction ATP L-valine tRNAVal AMP diphosphate L-valyl-tRNAVal | DDB0232432 | CDS | 2152189 | 3156 | + | 0.270279 |