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2024-05-19 15:40:55

Gene list

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COG category: Chromatin structure and dynamics
Organism: Dictyostelium discoideum AX4, AX4

Number of genes found: 48

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dictyostelium discoideum AX4, AX4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
DDB_G0275017 DDB_G0275017 contains a MOZSAS-like domain (Monocytic leukemia Zinc fingerSomething About Silencing) predicted to have histone acetyltransferase activityDDB0232429 CDS5183368 1920 - 0.336979
DDB_G0277537 DDB_G0277537 subunit of PI4K responsible for the phosphorylation of phosphatidylinositol (PI) to PI4P (ATP 1-phosphatidyl-1D-myo-inositol ADP 1-phosphatidyl-1D-myo-inositol 4-phosphate) the first committed step in the generation of phosphatidylinositol 45-bisphosphate (PIP2) a precursor of the second messenger inositol 145-trisphosphate (InsP3)DDB0232429 CDS7989159 7383 + 0.301233
DDB_G0279699 DDB_G0279699 contains a MOZSAS-like domain (Monocytic leukemia Zinc finger and Something About Silencing) predicted to have histone acetyltransferase activityDDB0232430 CDS2459375 1974 + 0.31155
DDB_G0281045 DDB_G0281045 DDB0232430 CDS3967277 5805 + 0.316968
DDB_G0286479 DDB_G0286479 DDB0232431 CDS4506469 3504 - 0.257991
DDB_G0293800 DDB_G0293800 atypical protein kinase GTE group contains ankyrin repeats a bromodomain and a BTPPOZ domainDDB0232433 CDS3334534 2421 + 0.297811
H2AX DDB_G0279667 component of the H2A-H2B-H3-H4 histone octamer dimerizes with histone H2BDDB0232430 CDS2410613 465 + 0.427957
H2AZ DDB_G0286747 component of the H2A-H2B-H3-H4 histone octamer dimerizes with histone H2BDDB0232431 CDS4922308 432 - 0.293981
H2Av1 DDB_G0289187 DDB0232432 CDS2451919 783 + 0.246488
H2Av2 DDB_G0289193 DDB0232432 CDS2455467 861 + 0.339141
H2Av3 DDB_G0289197 DDB0232432 CDS2457890 378 + 0.195767
H2Bv1 DDB_G0293758 DDB0232433 CDS3289579 681 - 0.330396
H3a DDB_G0267402 component of the H2A-H2B-H3-H4 histone octamer dimerizes with histone H4DDB0232428 CDS1520754 420 + 0.414286
H3b DDB_G0270838 component of the H2A-H2B-H3-H4 histone octamer dimerizes with histone H4DDB0232428 CDS4846006 411 - 0.403893
H3c DDB_G0271092 component of the H2A-H2B-H3-H4 histone octamer dimerizes with histone H4DDB0232428 CDS4845008 411 - 0.347932
H4a DDB_G0277183 one of two identical H4 proteins (other is DDB0232429 CDS7697697 327 - 0.425076
H4b DDB_G0276863 one of two identical H4 proteins (other is DDB0232429 CDS7515236 327 + 0.40367
ada2 DDB_G0280079 C-terminal half has similarity to the histone acetyltransferase complex component of Zea mays brbr bCommunity annotationb: DDB_G0280079 codes for a protein with significant homologies to the transcriptional ADAptor subunit ADA2 of budding yeast. Yeast ADA2 participates in several complexes together with the histone acetyl transferase GCN5 which also has an ortholog in Dicty. DDB_GO280079 appears likely to be cell-cycle regulated in Dicty as it is threefold overexpressed in a strain in which the Dicty Rb ortholog rblA has been disrupted.In addition DDB_G0280079 shows a developmental trajectory similar to those of most genes involved in cell cycle progression (see DictyExpress). Finally the promoter contains an element (GCGCCCAAA) which is highly enriched in the promoters of Dictyostelium cell cycle genes. Harry MacWilliams June 2010br DDB0232430 CDS2899122 2745 - 0.27796
asf1 DDB_G0285513 DDB0232431 CDS3334165 465 - 0.301075
atr1 DDB_G0291380 atypical PIKK family protein kinase similar to protein kinase ATR which modulates cell cycle progression and DNA repair in other organisms ATR phosphorylates Rad17 histone H2AX p53 and Nbs1DDB0232433 CDS214264 9474 - 0.259552
dnapkcs DDB_G0281167 atypical PIKK family protein kinase similar to human DNA-PKcs required for the repair of DNA double-strand breaks belongs to the PIKK family of protein kinasesDDB0232430 CDS4132807 12900 + 0.265504
dng1 DDB_G0284411 DDB0232431 CDS1965235 975 + 0.322051
elp3 DDB_G0290103 similar to ELP3 the histone acetyltransferase subunit of the subunit of the RNA polymerase II elongator complexDDB0232432 CDS3656306 1680 + 0.335119
gcn5 DDB_G0283459 DDB0232431 CDS727119 1239 - 0.284907
hdaA DDB_G0268024 DDB0232428 CDS1320084 1488 - 0.303763
hdaB DDB_G0270338 DDB0232428 CDS4667184 1269 + 0.300236
hdaC DDB_G0280195 DDB0232430 CDS3087742 5115 - 0.307918
hdaD DDB_G0279267 DDB0232430 CDS1861211 4470 - 0.275615
mybX DDB_G0288285 DDB0232432 CDS1347341 4863 - 0.282747
ncapD2 DDB_G0293984 component of the condensin I complex required for conversion of interphase chromatin into mitotic condensed chromosomesDDB0232433 CDS3563765 4212 - 0.243115
ncapGa DDB_G0281419 putative component of the condensin I complex required for conversion of interphase chromatin into mitotic condensed chromosomes There is another putative NCAPG gene in D. discoideum (DDB0232430 CDS4452796 4611 - 0.227933
ncapH DDB_G0292066 component of the condensin I complex required for conversion of interphase chromatin into mitotic condensed chromosomesDDB0232433 CDS1141212 2637 + 0.264316
nfyB DDB_G0279419 putative ortholog of the B subunit of the heterotrimeric transcription factor NFY composed of NfyA NfyB and NfyCDDB0232430 CDS2020767 1473 + 0.308893
nhp6 DDB_G0270260 similar to S. cerevisiae nonhistone chromosomal protein 6A and B (NCP6A and NCP6B) and mammalian HMGB2 contains a single HMG12 boxDDB0232428 CDS4527247 426 + 0.36385
pikA DDB_G0278727 DDB0232430 CDS1154369 4716 + 0.261026
pikB DDB_G0283081 DDB0232431 CDS247398 5574 - 0.311805
pikC DDB_G0275011 DDB0232429 CDS5211773 5094 + 0.270907
pikD DDB_G0288485 subunit of PI4K responsible for the phosphorylation of phosphatidylinositol (PI) to PI4P (ATP 1-phosphatidyl-1D-myo-inositol ADP 1-phosphatidyl-1D-myo-inositol 4-phosphate) the first committed step in the generation of phosphatidylinositol 45-bisphosphate (PIP2) a precursor of the second messenger inositol 145-trisphosphate (InsP3)DDB0232432 CDS1616073 3543 + 0.269828
pikE DDB_G0289601 ortholog of yeast VPS34 a phosphatidylinositol 3-kinaseDDB0232432 CDS3005109 2451 - 0.299878
pikF DDB_G0268548 putative PI3K that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring has the capacity to bind and be activated by the GTP-bound small GTPase rasDDB0232428 CDS1099622 4149 + 0.291396
pikG DDB_G0282625 putative PI3K that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring has the capacity to bind and be activated by the GTP-bound small GTPase rasDDB0232430 CDS6013022 5016 - 0.234649
pikH DDB_G0291093 putative PI3k putative PI3K that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring unlike other PI3Ks does not contain a ras binding domain but a PH domain and does not localize to the cell cortex upon chemotactic stimulationDDB0232432 CDS4980832 5463 - 0.242541
smg1 DDB_G0275845 atypical PIKK family protein kinase similar to the PI-3-kinase-related kinase SMG1 which functions in nonsense-mediated mRNA decay belongs to the PIKK family of protein kinasesDDB0232429 CDS5665840 7035 + 0.267235
spt16 DDB_G0282677 similar to SPT16 of the FACT complex a heterodimer of ssrp1 and spt16 the FACT complex is a general chromatin factor that acts to reorganize nucleosomes involved in multiple processes that require DNA as a template such as mRNA elongation DNA replication and DNA repairDDB0232430 CDS6105920 3219 - 0.339546
spt16_ps DDB_G0282775 putative pseudogene similar to D. discoideum gene DDB0232430 CDS5907328 582 + 0.359107
ssrp1 DDB_G0290331 ortholog of the SSRP1 component of the FACT complex a heterodimer of ssrp1 and spt16 the FACT complex is a general chromatin factor that acts to reorganize nucleosomes involved in multiple processes that require DNA as a template such as mRNA elongation DNA replication and DNA repairDDB0232432 CDS3969916 1584 - 0.342172
swi3 DDB_G0277033 similar to H. sapiens SWISNF subunit SMARCC1 and the yeast subunit SWI3 of the chromatin remodeling complexDDB0232429 CDS7295274 3672 - 0.301471
tor DDB_G0281569 atypical PIKK family FRAP subfamily protein kinase ortholog of tor a protein kinase that plays a central role in response to nutrients stress and intracellular energy state called mTOR in mammals in dTOR in Drosophila DDB0232430 CDS4934791 7143 - 0.347893