Gene list
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COG category: RNA processing and modification
Organism: Polysphondylium pallidum, PN500
Number of genes found: 37
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Polysphondylium pallidum, PN500 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
g10191 | PPL_10728 | EXOLTKG01B86TH-3_part2 | CDS | 925365 | 3426 | + | 0.3885 | |
g10431 | PPL_13621 | EXOLTKG02GJRTE-5 | CDS | 101237 | 864 | + | 0.333333 | |
g10461 | PPL_11028 | EXOLTKG02GJRTE-5 | CDS | 199471 | 684 | + | 0.355263 | |
g10956 | PPL_11702 | PN500-G-d-37g01.f1-5 | CDS | 48570 | 2274 | + | 0.389622 | |
g11381 | PPL_00003 | contig_new08661_1.exp-5 | CDS | 3898 | 1029 | + | 0.414966 | |
g2309 | PPL_02616 | DPPA0090b03.f1-3_y_part1 | CDS | 119904 | 1314 | - | 0.405632 | |
g2563 | PPL_02883 | DPPA0090b03.f1-3_y_part1 | CDS | 779941 | 426 | + | 0.401408 | |
g2639 | PPL_02974 | DPPA0090b03.f1-3_y_part1 | CDS | 997453 | 1842 | - | 0.384908 | |
g2705 | PPL_12977 | DPPA0090b03.f1-3_y_part1 | CDS | 1185976 | 1056 | - | 0.382576 | |
g3458 | PPL_03919 | ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assembly | DPPB0337b12.r1-5 | CDS | 667336 | 1428 | + | 0.380252 |
g3727 | PPL_04210 | DPPB0360e11.f1-5 | CDS | 71804 | 2355 | + | 0.461147 | |
g3730 | PPL_04213 | DPPB0360e11.f1-5 | CDS | 80891 | 2688 | - | 0.354167 | |
g3925 | PPL_04436 | DPPB0360e11.f1-5 | CDS | 690086 | 1935 | + | 0.44186 | |
g4227 | PPL_04777 | E0KFERV02EE9X2-3_part1 | CDS | 577190 | 3291 | + | 0.419933 | |
g4515 | PPL_05118 | E3JQK7F01CUWUC-3_part1 | CDS | 157133 | 2103 | - | 0.450785 | |
g4817 | PPL_05455 | E3JQK7F01EFZL8-5 | CDS | 533476 | 1083 | - | 0.385042 | |
g5029 | PPL_05669 | E3JQK7F01EFZL8-5 | CDS | 1099115 | 1542 | + | 0.385214 | |
g5309 | PPL_05958 | E3JQK7F02G10GF-5 | CDS | 428407 | 3099 | - | 0.500161 | |
g5553 | PPL_06218 | E3JQK7F02HEVRT-5 | CDS | 26718 | 4860 | - | 0.425103 | |
g5557 | PPL_06222 | E3JQK7F02HEVRT-5 | CDS | 37731 | 4347 | - | 0.355648 | |
g5715 | PPL_06397 | E3JQK7F02HEVRT-5 | CDS | 521376 | 2220 | - | 0.429279 | |
g6038 | PPL_06763 | E3JQK7F02HW0LE-5_part2 | CDS | 424143 | 6903 | - | 0.466319 | |
g6321 | PPL_07062 | E3JQK7F02HW0LE-5_part2 | CDS | 1223471 | 2112 | + | 0.393466 | |
g6630 | PPL_07415 | EVG8W8Q01C9YYY-5_part1 | CDS | 127491 | 2199 | - | 0.399272 | |
g6931 | PPL_07750 | EVG8W8Q02J3HU6-3_part1 | CDS | 245528 | 3243 | + | 0.410731 | |
g7065 | PPL_07881 | EVG8W8Q02J3HU6-3_part1 | CDS | 627600 | 2412 | - | 0.385572 | |
g7066 | PPL_13379 | EVG8W8Q02J3HU6-3_part1 | CDS | 630268 | 1908 | - | 0.412998 | |
g7562 | PPL_08452 | EVG8W8Q02J3HU6-3_part3 | CDS | 995312 | 3123 | + | 0.409222 | |
g7627 | PPL_08524 | EVG8W8Q02J3HU6-3_part3 | CDS | 1181600 | 1848 | - | 0.388528 | |
g8389 | PPL_09354 | subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cells | EVKQ3GG01CS5PZ-3_part2 | CDS | 273826 | 1587 | - | 0.326402 |
g8876 | PPL_12522 | EVKQ3GG01DOIJB_part2 | CDS | 450538 | 2955 | + | 0.379019 | |
g8917 | PPL_12567 | EVKQ3GG01DOIJB_part2 | CDS | 581996 | 1911 | - | 0.403454 | |
g8993 | PPL_09416 | EVKQ3GG02I325Y-5_part1 | CDS | 24355 | 2955 | + | 0.465313 | |
g9376 | PPL_09824 | EVKQ3GG02I325Y-5_part1 | CDS | 1145981 | 3276 | - | 0.392552 | |
g991 | PPL_01155 | DPPA0061d07.r1-5 | CDS | 839396 | 2166 | + | 0.354109 | |
g9918 | PPL_10444 | EXOLTKG01B86TH-3_part2 | CDS | 65283 | 2685 | + | 0.408939 | |
rtc1 | PPL_05499 | ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNA | E3JQK7F01EFZL8-5 | CDS | 656619 | 1314 | - | 0.378995 |