Gene list
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COG category: RNA processing and modification
Organism: Dictyostelium discoideum AX4, AX4
Number of genes found: 36
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Dictyostelium discoideum AX4, AX4 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
DDB_G0272997 | DDB_G0272997 | DDB0232429 | CDS | 2081848 | 3345 | - | 0.23707 | |
DDB_G0279513 | DDB_G0279513 | DDB0232430 | CDS | 2186381 | 1854 | + | 0.28425 | |
DDB_G0284217 | DDB_G0284217 | similar to H. sapiens CNOT7 and CNOT8 and S. cerevisiae POP2 which are components of the CCR4-NOT transcription complex | DDB0232431 | CDS | 1700271 | 1104 | - | 0.288043 |
DDB_G0285269 | DDB_G0285269 | DDB0232431 | CDS | 3037532 | 930 | + | 0.274194 | |
DDB_G0285705 | DDB_G0285705 | contains a RING-finger that is a specialised type of Zn-finger domain which in some cases has been shown to be involved in ubiquitin E3 ligase activity contains 14 putative transmembrane domains | DDB0232431 | CDS | 3615364 | 3267 | + | 0.296602 |
DDB_G0289199 | DDB_G0289199 | DDB0232432 | CDS | 2458510 | 1899 | - | 0.282254 | |
DDB_G0289461 | DDB_G0289461 | putative ortholog of H. sapiens CNOT6 and S. cerevisiae CCR4 component of the CCR4-NOT transcription complex | DDB0232432 | CDS | 2814027 | 1722 | - | 0.260163 |
DDB_G0289921 | DDB_G0289921 | DDB0232432 | CDS | 3426110 | 3708 | + | 0.263484 | |
DDB_G0291836 | DDB_G0291836 | DDB0232433 | CDS | 812338 | 2850 | + | 0.236842 | |
atxn2 | DDB_G0269682 | similar to the human ataxin-2 (ATXN2) defects in the gene cause spinocerebellar ataxia 2 (SCA2) | DDB0232428 | CDS | 3309660 | 3312 | - | 0.352657 |
bxdc5 | DDB_G0285829 | ortholog of S. cerevisiae RPF1 and H. sapiens BXDC5 a nucleolar protein involved in the assembly of the large ribosomal subunit | DDB0232431 | CDS | 3708077 | 954 | - | 0.292453 |
cdc5l | DDB_G0279311 | contains two Myb DNA-binding domains ortholog of human CDC5L and yeast CEF1 may play a role in transcriptional activation and in mRNA splicing | DDB0232430 | CDS | 1918418 | 2403 | - | 0.28506 |
clp1 | DDB_G0285507 | ortholog of the conserved CLP1 protein S. cerevisiae CLP1 is involved in both the endonucleolytic cleavage and polyadenylation steps of mRNA 3'-end maturation Mammalian CLP1 is a subunit of cleavage complex IIA which is required for cleavage but not for polyadenylation of pre-mRNA | DDB0232431 | CDS | 3327387 | 1380 | - | 0.322464 |
cpsf1 | DDB_G0281585 | ortholog of the human CPSF1 and yeast YTH1 the 160 kDa subunit of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs human CPSF1 involved in the RNA recognition step of the polyadenylation reaction | DDB0232430 | CDS | 4665204 | 4887 | - | 0.252507 |
crop | DDB_G0278799 | DDB0232430 | CDS | 1204493 | 1083 | - | 0.304709 | |
cstf3 | DDB_G0286645 | component of the CSTF complex which in mammalian is required for polyadenylation and 3'-end cleavage of pre-mRNAs | DDB0232431 | CDS | 4781245 | 3198 | + | 0.329894 |
dlrA | DDB_G0290485 | DDB0232432 | CDS | 4410371 | 2457 | - | 0.299959 | |
fip1l1 | DDB_G0288797 | ortholog of yeast FIP1 and mmamalian FIP1L component of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs directly interacts with poly(A) polymerase | DDB0232432 | CDS | 1979163 | 1683 | + | 0.343434 |
imp4 | DDB_G0302418 | ortholog of the conserved eukaryotic IMP4 component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP3 and MPP10 | DDB0232430 | CDS | 4835697 | 861 | + | 0.297329 |
mybA | DDB_G0293900 | DDB0232433 | CDS | 3493719 | 3693 | - | 0.25589 | |
mybAA | DDB_G0268368 | DDB0232428 | CDS | 1003245 | 2916 | + | 0.284979 | |
mybQ | DDB_G0289319 | DDB0232432 | CDS | 2641022 | 2730 | - | 0.334066 | |
papA | DDB_G0288259 | RNA polymerase that specifically incorporates ATP at the 3' end of mRNA | DDB0232432 | CDS | 1302980 | 2430 | + | 0.327572 |
prp40 | DDB_G0283543 | ortholog of prp40 which in yeast is a U1 snRNP protein involved in splicing | DDB0232431 | CDS | 792074 | 2046 | - | 0.280547 |
prpf8 | DDB_G0274229 | central component of the U4U6-U5 snRNP complex contains the PRO8NT PROCN PRO C-terminal and Mov34MPNPAD-1 domains found in pre-mRNA splicing factors of the PRO8 family | DDB0232429 | CDS | 4703192 | 6984 | - | 0.33362 |
rcl1 | DDB_G0282803 | DDB0232430 | CDS | 6124057 | 1116 | - | 0.305556 | |
rexo2-1 | DDB_G0273355 | similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene | DDB0232429 | CDS | 2683400 | 573 | + | 0.30541 |
rexo2-2 | DDB_G0273741 | similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene | DDB0232429 | CDS | 3347298 | 573 | - | 0.30541 |
rtc1 | DDB_G0276159 | ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNA | DDB0232429 | CDS | 6274208 | 1302 | - | 0.320276 |
sf1 | DDB_G0293554 | ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assembly | DDB0232433 | CDS | 3035802 | 1506 | + | 0.308101 |
sf3a2 | DDB_G0293876 | DDB0232433 | CDS | 3412404 | 648 | + | 0.274691 | |
sf3a3 | DDB_G0270020 | subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cells | DDB0232428 | CDS | 4032294 | 1635 | + | 0.223242 |
sf3b1 | DDB_G0275957 | DDB0232429 | CDS | 6197621 | 3156 | - | 0.359949 | |
sf3b2 | DDB_G0284555 | DDB0232431 | CDS | 2068357 | 1878 | + | 0.305112 | |
xrn1 | DDB_G0276137 | DDB0232429 | CDS | 6232603 | 5250 | - | 0.333333 | |
xrn2 | DDB_G0269922 | DDB0232428 | CDS | 3871046 | 3573 | - | 0.285195 |