Gene list
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COG category: Nucleotide transport and metabolism
Organism: Dictyostelium discoideum AX4, AX4
Number of genes found: 102
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Dictyostelium discoideum AX4, AX4 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
DDB_G0268194 | DDB_G0268194 | catalyzes the reaction Hsub2subO dCTP - NH3 dUTP in de novo biosynthesis of pyrimidine deoxyribonucleotides | DDB0232428 | CDS | 1641107 | 768 | - | 0.311198 |
DDB_G0271914 | DDB_G0271914 | DDB0232429 | CDS | 1000440 | 675 | - | 0.358519 | |
DDB_G0272030 | DDB_G0272030 | DDB0232429 | CDS | 1189650 | 678 | - | 0.361357 | |
DDB_G0272048 | DDB_G0272048 | DDB0232429 | CDS | 1193466 | 1176 | - | 0.271259 | |
DDB_G0272442 | DDB_G0272442 | DDB0232429 | CDS | 1598330 | 705 | - | 0.307801 | |
DDB_G0272839 | DDB_G0272839 | has a short region of similarity to aprataxin a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia | DDB0232429 | CDS | 2148504 | 1173 | + | 0.224211 |
DDB_G0273137 | DDB_G0273137 | there is a second copy of this gene | DDB0232429 | CDS | 2854787 | 1818 | + | 0.262376 |
DDB_G0273617 | DDB_G0273617 | there is a second copy of this gene | DDB0232429 | CDS | 3174939 | 1818 | - | 0.262376 |
DDB_G0275179 | DDB_G0275179 | similar to H. sapiens CECR1 protein (Swiss Prot Q9NZK5) | DDB0232429 | CDS | 5345936 | 1632 | + | 0.273284 |
DDB_G0275307 | DDB_G0275307 | DDB0232429 | CDS | 5319128 | 810 | - | 0.22716 | |
DDB_G0275667 | DDB_G0275667 | homolog of human and S. cerevisiae KTI12 (killer toxin insensitivity protein 12) S. cerevisiae KTI12 interacts with the Elongator complex a component of the elongating form of RNA polymerase II | DDB0232429 | CDS | 5787522 | 822 | - | 0.283455 |
DDB_G0276407 | DDB_G0276407 | DDB0232429 | CDS | 6832640 | 1236 | + | 0.279935 | |
DDB_G0277355 | DDB_G0277355 | DDB0232429 | CDS | 7838828 | 969 | - | 0.415893 | |
DDB_G0277515 | DDB_G0277515 | DDB0232429 | CDS | 8077667 | 1542 | - | 0.323606 | |
DDB_G0277559 | DDB_G0277559 | contains a predicted signal peptide and a putative C-terminal transmembrane domain similar to D. purpureum protein | DDB0232429 | CDS | 8125465 | 1938 | - | 0.209494 |
DDB_G0278493 | DDB_G0278493 | DDB0232430 | CDS | 967226 | 528 | + | 0.263258 | |
DDB_G0278573 | DDB_G0278573 | DDB0232430 | CDS | 1094317 | 810 | + | 0.245679 | |
DDB_G0278841 | DDB_G0278841 | DDB0232430 | CDS | 1265394 | 1560 | - | 0.253846 | |
DDB_G0281219 | DDB_G0281219 | DDB0232430 | CDS | 4234799 | 1131 | - | 0.290893 | |
DDB_G0282171 | DDB_G0282171 | DDB0232430 | CDS | 5485189 | 684 | - | 0.387427 | |
DDB_G0282255 | DDB_G0282255 | DDB0232430 | CDS | 5579876 | 1152 | - | 0.366319 | |
DDB_G0285299 | DDB_G0285299 | DDB0232431 | CDS | 3070354 | 1635 | - | 0.310092 | |
DDB_G0285467 | DDB_G0285467 | DDB0232431 | CDS | 3266519 | 1398 | + | 0.326896 | |
DDB_G0285539 | DDB_G0285539 | DDB0232431 | CDS | 3354945 | 1575 | + | 0.233016 | |
DDB_G0286085 | DDB_G0286085 | DDB0232431 | CDS | 4039412 | 1188 | - | 0.222222 | |
DDB_G0286161 | DDB_G0286161 | DDB0232431 | CDS | 4152139 | 1269 | + | 0.291568 | |
DDB_G0287551 | DDB_G0287551 | DDB0232432 | CDS | 406658 | 1368 | + | 0.284357 | |
DDB_G0287753 | DDB_G0287753 | DDB0232432 | CDS | 656012 | 891 | + | 0.251403 | |
DDB_G0287839 | DDB_G0287839 | DDB0232432 | CDS | 789237 | 1452 | + | 0.309917 | |
DDB_G0287985 | DDB_G0287985 | DDB0232432 | CDS | 933669 | 912 | + | 0.3125 | |
DDB_G0288019 | DDB_G0288019 | DDB0232432 | CDS | 981451 | 720 | - | 0.306944 | |
DDB_G0288099 | DDB_G0288099 | DDB0232432 | CDS | 1100340 | 765 | - | 0.256209 | |
DDB_G0289439 | DDB_G0289439 | DDB0232432 | CDS | 2778983 | 405 | + | 0.367901 | |
DDB_G0291478 | DDB_G0291478 | DDB0232433 | CDS | 405733 | 1263 | - | 0.257324 | |
DDB_G0291764 | DDB_G0291764 | related to ribonucleotide reductase small subunit missing about 25 | DDB0232433 | CDS | 704842 | 774 | + | 0.239018 |
DDB_G0292080 | DDB_G0292080 | DDB0232433 | CDS | 1159633 | 972 | + | 0.359053 | |
DDB_G0292096 | DDB_G0292096 | contains a cytidine and deoxycytidylate deaminase zinc-binding region contains a carbohydrate-binding domain contains a predicted signal peptide | DDB0232433 | CDS | 1176701 | 966 | - | 0.421325 |
DDB_G0292246 | DDB_G0292246 | DDB0232433 | CDS | 1370987 | 891 | + | 0.274972 | |
DDB_G0292298 | DDB_G0292298 | DDB0232433 | CDS | 1424473 | 501 | - | 0.307385 | |
DDB_G0292928 | DDB_G0292928 | DDB0232433 | CDS | 2282811 | 483 | - | 0.233954 | |
DDB_G0293580 | DDB_G0293580 | catalyzes the reaction Hsub2subO dCTP NH3 dUTP in de novo biosynthesis of pyrimidine deoxyribonucleotides | DDB0232433 | CDS | 3073231 | 525 | - | 0.289524 |
ada | DDB_G0287371 | catalyzes the reaction Hsub2subO adenosine NHsub3sub inosine in salvage pathways of nucleosides contains two tandem repeats of the adenosine deaminase domain | DDB0232432 | CDS | 206705 | 2319 | + | 0.287193 |
adkA | DDB_G0283805 | catalyzes the reaction AMP ATP ADP ADP in de novo DNA synthesis | DDB0232431 | CDS | 1124176 | 831 | - | 0.32491 |
adkB | DDB_G0292730 | catalyzes the reaction AMP ATP ADP ADP in de novo DNA synthesis predicted to be nuclear | DDB0232433 | CDS | 2003598 | 699 | - | 0.291846 |
allB1 | DDB_G0282199 | catalyzes the reaction Hsub2subO allantoin allantoate | DDB0232430 | CDS | 5513834 | 1950 | + | 0.318462 |
allB2 | DDB_G0270162 | catalyzes the reaction Hsub2subO allantoin allantoate expressed in upper cup cells during culmination | DDB0232428 | CDS | 4345093 | 1533 | + | 0.262231 |
allC | DDB_G0280267 | catalyzes the reaction allantoate Hsub2subO (S)-ureidoglycolate urea in allantoin degradation | DDB0232430 | CDS | 3183979 | 1110 | + | 0.336036 |
amdA | DDB_G0292266 | required for spore formation inhibits the formation of aspidocytes catalyzes the reaction AMP Hsub2subO IMP NHsub3subbr bNomenclature conflict: b Do not confuse this gene with amd1 encoding S-adenosylmethionine decarboxylase | DDB0232433 | CDS | 1491265 | 2373 | - | 0.313527 |
aprt | DDB_G0270174 | catalyzes the reaction AMP pyrophosphate PRPP adenine in nucleoside salvage pathways | DDB0232428 | CDS | 4368158 | 600 | + | 0.29 |
cda | DDB_G0288933 | catalyzes the reactions cytidine Hsub2subO uridine NHsub3sub and Hsub2subO deoxycytidine NHsub3sub deoxyuridine | DDB0232432 | CDS | 2144804 | 444 | - | 0.351351 |
ctps | DDB_G0280567 | catalyzes the reaction L-glutamine Hsub2subO UTP ATP - CTP phosphate ADP L-glutamate in de novo biosynthesis of pyrimidine ribonucleotides | DDB0232430 | CDS | 3510967 | 1710 | - | 0.350292 |
dak | DDB_G0278191 | catalyzes the reaction ATP deoxyadenosine ADP dAMP | DDB0232430 | CDS | 426271 | 738 | + | 0.285908 |
dgk | DDB_G0280843 | catalyzes the reaction ATP deoxyguanosine ADP dGMP | DDB0232430 | CDS | 1424429 | 858 | - | 0.226107 |
dtymk | DDB_G0290033 | catalyzes the reaction dTMP ATP dTDP ADP in de novo biosynthesis of pyrimidine deoxyribonucleotides | DDB0232432 | CDS | 3573621 | 669 | - | 0.258595 |
dut | DDB_G0293374 | catalyses the reaction Hsub2subO dUTP pyrophosphate dUMP in de novo biosynthesis of pyrimidine deoxyribonucleotides | DDB0232433 | CDS | 2804871 | 540 | - | 0.327778 |
fhit | DDB_G0274257 | ortholog of human FHIT which is a possible tumor suppressor for specific tissues numerous tumor types are associated with aberrant forms of human FHIT protein | DDB0232429 | CDS | 4124527 | 450 | - | 0.311111 |
fthS | DDB_G0290397 | catalyzes the reaction ATP formate tetrahydrofolate ADP phosphate N10-formyl-Hsub4subF in various biosynthetic pathways in plants and in Dictyostelium this is a monofunctional enzyme while in yeast and in metazoan the same enzyme has two additional activities encoded by | DDB0232432 | CDS | 4031914 | 1917 | + | 0.383933 |
gghA | DDB_G0286535 | DDB0232431 | CDS | 4609676 | 954 | - | 0.328092 | |
gghB | DDB_G0289365 | DDB0232432 | CDS | 2708637 | 1044 | - | 0.229885 | |
gmkA | DDB_G0279001 | catalyzes the reaction GMP ATP GDP ADP in the de novo and salvage pathways of purine and pyrimidine nucleotides | DDB0232430 | CDS | 1502267 | 609 | + | 0.279146 |
guaA | DDB_G0281551 | catalyzes the reaction xanthosine-5-phosphate Hsub2subO L-glutamine ATP L-glutamate GMP pyrophosphate AMP in GMP biosynthesis | DDB0232430 | CDS | 4709076 | 2157 | + | 0.304126 |
guaB | DDB_G0283701 | catalyzes the reaction Hsub2subO NAD IMP xanthosine-5-phosphate NADH the first step of GMP biosynthesis | DDB0232431 | CDS | 1000722 | 1548 | - | 0.386305 |
guaD | DDB_G0277743 | catalyzes the reaction guanine Hsub2subO xanthine NHsub3sub | DDB0232429 | CDS | 8417392 | 1353 | + | 0.311899 |
hprT | DDB_G0285193 | catalyzes the reaction PRPP hypoxanthine pyrophosphate IMP in the salvage pathways of purine nucleosides br overexpressed in dstB (STATb) null mutants | DDB0232431 | CDS | 2972049 | 543 | + | 0.281768 |
itpa | DDB_G0286495 | ortholog of human ITPA and S. cerevisiae HAM1 hydrolyzes ITP and dITP to their respective monophosphate derivatives defects in human ITPA cause inosine triphosphate pyrophosphohydrolase deficiency characterized by an abnormal accumulation of inosine triphosphate in erythrocytes however pathological symptoms are not known | DDB0232431 | CDS | 4555858 | 585 | - | 0.309402 |
iunH | DDB_G0272738 | catalyzes the reaction N-D-ribosylpurine Hsub2subO purine D-ribose | DDB0232429 | CDS | 2227186 | 1023 | + | 0.311828 |
mcfZ | DDB_G0293874 | belongs to the substrate carrier protein family involved in transport of molecules across the mitochondrial membrane expressed in pstAO cells and in upper and lower cups during culminationbrbr bCommunity annotation:b Overview of the | DDB0232433 | CDS | 3410167 | 906 | + | 0.36755 |
mth | DDB_G0293766 | DDB0232433 | CDS | 3300203 | 486 | + | 0.238683 | |
ndkC-1 | DDB_G0273069 | catalyzes the phosphorylation of nucleoside or deoxynucleoside diphosphates into the corresponding triphosphates there is a second copy of this gene | DDB0232429 | CDS | 2603092 | 468 | - | 0.397436 |
ndkC-2 | DDB_G0273805 | catalyzes the phosphorylation of nucleoside or deoxynucleoside diphosphates into the corresponding triphosphates there is a second copy of this gene | DDB0232429 | CDS | 3427961 | 468 | + | 0.397436 |
ndkM | DDB_G0279911 | DDB0232430 | CDS | 2740248 | 663 | + | 0.380091 | |
ndrJ | DDB_G0292654 | similar to class II ribonucleotide reductase a monomeric form of ribonucleotide reductase that uses ribonucletide triphosphates rather than diphosphates as substrates the only other eukaryote in which this enzyme is present is Euglena gracilis | DDB0232433 | CDS | 1906693 | 2277 | + | 0.312692 |
pkiA | DDB_G0289391 | DDB0232432 | CDS | 2783089 | 384 | + | 0.351562 | |
prsA | DDB_G0284669 | ortholog of PRS involved in nucleotide histidine and tryptophan biosynthesis | DDB0232431 | CDS | 2322296 | 954 | + | 0.318658 |
prsB | DDB_G0272246 | highly similar to PRS involved in nucleotide histidine and tryptophan biosynthesis | DDB0232429 | CDS | 1758981 | 990 | - | 0.29596 |
prsC | DDB_G0283627 | highly similar to PRS involved in nucleotide histidine and tryptophan biosynthesis | DDB0232431 | CDS | 883884 | 966 | - | 0.284679 |
purA | DDB_G0285429 | catalyzes the reaction L-aspartate IMP GTP adenylo-succinate phosphate GDP in de novo DNA synthesis | DDB0232431 | CDS | 3358729 | 1284 | + | 0.348131 |
purB | DDB_G0288333 | catalyzes two reactions in de novo DNA synthesis: 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole fumarate AICAR and adenylo-succinate fumarate AMP | DDB0232432 | CDS | 1402047 | 1401 | + | 0.33262 |
purC%2FE | DDB_G0283987 | bifunctional enzyme composed of SAICAR synthase and AIR carboxylase that catalyze steps in de novo DNA synthesis | DDB0232431 | CDS | 1280148 | 2994 | + | 0.325985 |
purD | DDB_G0290121 | bifunctional enzyme of the de novo DNA synthesis pathway contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities | DDB0232432 | CDS | 3683216 | 2448 | + | 0.318219 |
purF | DDB_G0274321 | catalyzes the reaction L-glutamine PRPP Hsub2subO 5-phospho-beta-D-ribosyl-amine pyrophosphate L-glutamate the first step in de novo DNA synthesis | DDB0232429 | CDS | 3954678 | 1566 | + | 0.393997 |
purH | DDB_G0277087 | bifunctional enzyme that catalyzes the reactions Nsup10sup-formyl-Hsub4subF AICAR tetrahydrofolate phosphoribosyl-formamido-carboxamide and phosphoribosyl-formamido-carboxamide IMP Hsub2subO expressed in prespore cells | DDB0232429 | CDS | 7485197 | 1629 | - | 0.349908 |
purL | DDB_G0288145 | catayzes the reaction ATP 5'-phosphoribosyl-N-formylglycineamide L-glutamine Hsub2subO ADP phosphate 5-phosphoribosyl-n-formylglycineamidine L-glutamate in de novo DNA synthesis | DDB0232432 | CDS | 1141268 | 4068 | + | 0.342429 |
purN | DDB_G0288985 | catalyzes the reaction N10-formyl-Hsub4subF 5-phospho-ribosyl-glycineamide tetrahydrofolate 5'-phosphoribosyl-N-formylglycineamide in de novo DNA synthesis | DDB0232432 | CDS | 2206145 | 621 | + | 0.275362 |
pyd2 | DDB_G0269246 | ortholog of the human DPYS defects in DPYS cause cause of DHP (dihydropyrimidinase) deficiency second enzyme in the reductive pyrimidine degradation pathway (EC 3.5.2.2) catalyzes the reaction: 56-dihydrouracil Hsub2subO 3-ureidopropanoate | DDB0232428 | CDS | 3157203 | 1512 | - | 0.355159 |
pyr1-3 | DDB_G0276335 | multifunctional enzyme that carries out the three first enzymatic activities of the de novo pyrimidine biosynthetic pathway very similar to the tri-functional human CAD enzyme | DDB0232429 | CDS | 6728694 | 6678 | + | 0.351003 |
pyr4 | DDB_G0276331 | catalyzes the reaction Osub2sub dihydroorotate Hsub2subOsub2sub orotate in de novo biosynthesis of pyrimidine ribonucleotides | DDB0232429 | CDS | 6726246 | 1113 | - | 0.34142 |
pyr56 | DDB_G0280041 | bifunctional enzyme that catalyzes the reactions PRPP orotate orotidine-5'-phosphate pyrophosphate and orotidine-5'-phosphate COsub2sub UMP in de novo biosynthesis of pyrimidine ribonucleotides | DDB0232430 | CDS | 3010631 | 1437 | + | 0.338205 |
pyrK | DDB_G0287495 | phosphorylates dCMP and dUMP to dCDP and dUDP respectively | DDB0232432 | CDS | 334067 | 588 | + | 0.289116 |
rnrA | DDB_G0284071 | catalyzes the reaction 2'-deoxyribonucleoside diphosphate thioredoxin disulfide Hsub2subO ribonucleoside diphosphate reduced thioredoxin | DDB0232431 | CDS | 1503516 | 2613 | + | 0.381554 |
rnrB-1 | DDB_G0272616 | catalyzes the reaction 2'-deoxyribonucleoside diphosphate thioredoxin disulfide Hsub2subO ribonucleoside diphosphate reduced thioredoxin there is a second copy of this gene | DDB0232429 | CDS | 2355911 | 1017 | + | 0.301868 |
rnrB-2 | DDB_G0274021 | catalyzes the reaction 2'-deoxyribonucleoside diphosphate thioredoxin disulfide Hsub2subO ribonucleoside diphosphate reduced thioredoxin there is a second copy of this gene | DDB0232429 | CDS | 3674573 | 1017 | - | 0.301868 |
thyA | DDB_G0280045 | catalyzes the reaction 510-methylenetetrahydrofolate dUMP FADHsub2sub dTMP tetrahydrofolate FAD in de novo biosynthesis of pyrimidine deoxyribonucleotides | DDB0232430 | CDS | 3175236 | 912 | + | 0.337719 |
thyB | DDB_G0289179 | calmodulin-binding thymidine kinase 1 that is very similar to human TK1 catalyzes the reaction ATP thymidine ADP thymidine 5'-phosphate | DDB0232432 | CDS | 2508266 | 684 | - | 0.330409 |
udkA | DDB_G0269034 | catalyzes the reaction ATP uridine ADP UMP | DDB0232428 | CDS | 2213969 | 1500 | - | 0.292 |
udkB | DDB_G0274559 | catalyzes the reaction ATP uridine ADP UMP | DDB0232429 | CDS | 4144032 | 732 | - | 0.325137 |
udkC | DDB_G0283371 | contains a N-terminal uridine kinase domaine domain and a C-terminal adenylate cyclase domain like the UdkD protein and other plant proteins | DDB0232431 | CDS | 600577 | 1350 | - | 0.297778 |
udkD | DDB_G0271146 | contains a N-terminal uridine kinase domaine domain and a C-terminal adenylate cyclase domain like the UdkC protein and other plant proteins | DDB0232429 | CDS | 69676 | 1479 | - | 0.294118 |
udpA | DDB_G0284431 | catalyzes the reaction phosphate uridine ribose-1-phosphate uracil in salvage pathways of pyrimidine ribonucleotides and deoxyribose phosphate degradation | DDB0232431 | CDS | 1983105 | 750 | - | 0.4 |
udpB | DDB_G0280985 | catalyzes the reaction phosphate uridine ribose-1-phosphate uracil in salvage pathways of pyrimidine ribonucleotides and deoxyribose phosphate degradation | DDB0232430 | CDS | 3914149 | 870 | - | 0.310345 |
uprt | DDB_G0267560 | catalyzes the reaction UMP diphosphate uracil 5-phospho-alpha-D-ribose 1-diphosphate | DDB0232428 | CDS | 336383 | 651 | + | 0.294931 |
xdh | DDB_G0291047 | catalyzes the reactions xanthine NAD Hsub2subO urate NADH H and xanthine Hsub2subO Osub2sub urate Hsub2subOsub2sub | DDB0232432 | CDS | 4822800 | 4077 | + | 0.347559 |