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2024-05-19 18:08:59

Gene list

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COG category: Energy production and conversion
Organism: Polysphondylium pallidum, PN500

Number of genes found: 165

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Polysphondylium pallidum, PN500
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
g10001 PPL_10529 EXOLTKG01B86TH-3_part2 CDS302434 1995 + 0.435088
g10167 PPL_10699 EXOLTKG01B86TH-3_part2 CDS817816 945 - 0.409524
g10186 PPL_10722 EXOLTKG01B86TH-3_part2 CDS913121 1101 + 0.416894
g10409 PPL_10969 EXOLTKG02GJRTE-5 CDS44246 861 - 0.483159
g10426 PPL_10985 EXOLTKG02GJRTE-5 CDS90256 1323 + 0.460317
g10432 PPL_10989 EXOLTKG02GJRTE-5 CDS102373 1218 - 0.490148
g10587 PPL_11171 PN500-F-W-a08d11.p658-5_part2 CDS66793 1596 - 0.426692
g10659 PPL_11249 PN500-F-W-a08d11.p658-5_part2 CDS258593 2283 - 0.502409
g10727 PPL_11320 PN500-F-W-a08d11.p658-5_part2 CDS457136 1560 - 0.398077
g10908 PPL_11513 PN500-F-W-a08d11.p658-5_part2 CDS999070 762 + 0.408136
g10931 PPL_11679 delta subunit of the central stalk of mitochondrial F1F0 ATP synthase the enzyme complex responsible for ATP synthesisPN500-G-d-22a07.f1-5 CDS15346 531 - 0.450094
g10955 PPL_11701 bifunctional enolase-phosphatase that cleaves the substrates 23-diketo-5-methylthio-1-phosphopentane and 2-hydroxy-3-keto-5-methylthio-1-phosphopentenePN500-G-d-37g01.f1-5 CDS46653 759 - 0.445323
g10981 PPL_11726 catalyzes the reaction 2-methyl-3-oxopropanoate CoA NAD propanoyl-CoA COsub2sub NADH HsupsupPN500-G-d-37g01.f1-5 CDS119970 1581 + 0.513599
g10996 PPL_11743 PN500-G-d-72b01.r1-5 CDS12739 2478 - 0.403955
g11005 PPL_11752 PN500-G-d-72b01.r1-5 CDS35702 2448 + 0.455065
g11105 PPL_11859 PN500-G-d-72b01.r1-5 CDS363954 1557 + 0.426461
g11207 PPL_11962 PN500-G-d-72b01.r1-5 CDS612997 729 + 0.38546
g1122 PPL_01304 DPPA0061d07.r1-5 CDS1217805 1191 + 0.40806
g11282 PPL_11544 PN500-G-d-188d09.r1-5 CDS13789 1476 + 0.407859
g11307 PPL_11573 PN500-G-d-188d09.r1-5 CDS76745 735 + 0.395918
g11334 PPL_11602 PN500-G-d-188d09.r1-5 CDS158205 1179 - 0.470738
g11420 PPL_13702 contig_new08661_1.exp-5 CDS126952 1590 - 0.466667
g1238 PPL_01445 cytochrome b5 is a membrane bound hemoprotein that functions as an electron carrier for several membrane bound oxygenases contains a single C-terminal transmembrane domainDPPA0090b03.f1-3_x_part2 CDS150129 363 + 0.355372
g125 PPL_00222 DPPA0004F08.r1-5_part2 CDS354600 1488 - 0.486559
g1288 PPL_01499 ortholog of the F subunit of vacuolar ATP synthase that generates an acidic environment in several intracellular compartments V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes the F subunit is part of the V1 subunitDPPA0090b03.f1-3_x_part2 CDS312085 318 - 0.327044
g1297 PPL_01507 DPPA0090b03.f1-3_x_part2 CDS337961 1377 - 0.411038
g1531 PPL_01762 DPPA0090b03.f1-3_x_part3 CDS623292 330 + 0.481818
g1558 PPL_01793 catalyzes the reaction succinate ubiquinone fumarate ubiquinolDPPA0090b03.f1-3_x_part3 CDS699102 741 + 0.410256
g172 PPL_00275 DPPA0004F08.r1-5_part2 CDS473623 1209 - 0.44086
g176 PPL_00280 DPPA0004F08.r1-5_part2 CDS483928 1545 - 0.477023
g183 PPL_00287 DPPA0004F08.r1-5_part2 CDS503187 1887 - 0.437732
g1969 PPL_02228 catalyzes the reaction isocitrate NADP 2-oxoglutarate CO2 NADPHDPPA0090b03.f1-3_x_part3 CDS1886098 1320 - 0.459091
g1993 PPL_02250 DPPA0090b03.f1-3_x_part3 CDS1949455 1215 + 0.464198
g2073 PPL_12910 DPPA0090b03.f1-3_x_part3 CDS2194059 492 + 0.416667
g2154 PPL_02432 mitochondrial enzyme catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate ortholog of the H. sapiens D2HGDH which when defect causes D-2-hydroxyglutaric aciduria a rare recessive neurometabolic disorderDPPA0090b03.f1-3_x_part3 CDS2413184 1566 + 0.452746
g2392 PPL_02698 catalyzes the reaction (S)-malate NADPsupsup pyruvate COsub2sub NADPH Hsupsup transcriptionally regulated by SrfADPPA0090b03.f1-3_y_part1 CDS331638 1632 - 0.405637
g2401 PPL_02707 DPPA0090b03.f1-3_y_part1 CDS348999 1191 - 0.397985
g2567 PPL_02887 DPPA0090b03.f1-3_y_part1 CDS788781 780 - 0.473077
g2601 PPL_02931 catalyzes the reaction GTP succinate CoA GDP phosphate succinyl-CoADPPA0090b03.f1-3_y_part1 CDS878405 1275 - 0.489412
g264 PPL_00372 DPPA0004F08.r1-5_part2 CDS760796 1080 + 0.357407
g275 PPL_00383 DPPA0004F08.r1-5_part2 CDS797073 1032 - 0.443798
g2786 PPL_03138 DPPA0090b03.f1-3_y_part1 CDS1408897 1566 + 0.404215
g2801 PPL_03155 DPPA0090b03.f1-3_y_part1 CDS1464804 1983 + 0.478568
g2802 PPL_03156 DPPA0090b03.f1-3_y_part1 CDS1467853 1125 + 0.416
g2879 PPL_03234 putative ortholog of the pyruvate dehydrogenase complex component X (PDHX) that functions to link E2 (DPPA0090b03.f1-3_y_part1 CDS1667293 1095 + 0.393607
g2920 PPL_03277 DPPA0090b03.f1-3_y_part1 CDS1774249 1140 - 0.457895
g2935 PPL_03292 DPPA0090b03.f1-3_y_part1 CDS1808965 1005 + 0.383085
g2988 PPL_03352 DPPA0090b03.f1-3_y_part1 CDS1953648 1029 - 0.389699
g3001 PPL_03366 DPPA0090b03.f1-3_y_part1 CDS1993800 1371 - 0.48213
g3024 PPL_03395 DPPA0090b03.f1-3_y_part1 CDS2064194 1113 + 0.440252
g3148 PPL_03570 DPPA0255d09.f1-5 CDS70435 1281 - 0.374707
g3149 PPL_03571 DPPA0255d09.f1-5 CDS72401 1284 - 0.435358
g3181 PPL_03603 DPPA0255d09.f1-5 CDS157410 1938 + 0.51032
g3189 PPL_03612 catalyzes the reaction NADPH NAD NADP NADHDPPA0255d09.f1-5 CDS187730 3420 + 0.483918
g3288 PPL_03727 catalyzes the reaction ATP succinate CoA ADP phosphate succinyl-CoADPPB0337b12.r1-5 CDS203855 1326 - 0.442685
g3293 PPL_03730 DPPB0337b12.r1-5 CDS220707 321 - 0.41433
g3319 PPL_03759 ortholog of the mammalian V-type proton ATPase 16 kDa proteolipid subunit the proton-conducting pore forming subunit of the vacuolar ATP synthase that generates an acidic environment in several intracellular compartments V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes this protein is part of the V0 complexDPPB0337b12.r1-5 CDS284882 552 - 0.451087
g3389 PPL_03842 DPPB0337b12.r1-5 CDS485349 429 - 0.307692
g3433 PPL_03892 DPPB0337b12.r1-5 CDS599360 1488 + 0.421371
g3439 PPL_03899 DPPB0337b12.r1-5 CDS621831 1410 - 0.476596
g3481 PPL_03940 DPPB0337b12.r1-5 CDS725992 1485 + 0.447811
g3525 PPL_03988 DPPB0337b12.r1-5 CDS849497 1413 + 0.475584
g3624 PPL_04094 ortholog of the D subunit of vacuolar ATP synthase that generates an acidic environment in several intracellular compartments V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes the D subunit is part of the V1 subunit there is a second copy of this gene DPPB0337b12.r1-5 CDS1123258 1047 + 0.397326
g3629 PPL_04099 DPPB0337b12.r1-5 CDS1135769 1017 - 0.363815
g3722 PPL_04205 DPPB0360e11.f1-5 CDS59282 3093 - 0.491109
g3748 PPL_04231 DPPB0360e11.f1-5 CDS138525 1854 + 0.462244
g3791 PPL_04282 DPPB0360e11.f1-5 CDS262323 3969 - 0.462585
g3872 PPL_13114 DPPB0360e11.f1-5 CDS524486 2178 - 0.352617
g3945 PPL_04455 DPPB0360e11.f1-5 CDS740627 1812 - 0.409492
g4042 PPL_04564 cytochrome b5 is a membrane bound hemoprotein that functions as an electron carrier for several membrane bound oxygenases contains a single C-terminal transmembrane domainE0KFERV02EE9X2-3_part1 CDS14455 408 - 0.458333
g4062 PPL_13139 E0KFERV02EE9X2-3_part1 CDS53156 1161 - 0.380706
g4083 PPL_04606 E0KFERV02EE9X2-3_part1 CDS117210 1128 - 0.39805
g4342 PPL_04906 E0KFERV02EE9X2-3_part1 CDS884968 1812 - 0.437086
g4481 PPL_05078 E3JQK7F01CUWUC-3_part1 CDS67106 387 - 0.395349
g4499 PPL_05100 E3JQK7F01CUWUC-3_part1 CDS112501 2754 - 0.441903
g4534 PPL_05137 E3JQK7F01CUWUC-3_part1 CDS213008 1806 + 0.472315
g4646 PPL_05263 E3JQK7F01EFZL8-5 CDS13761 1488 + 0.466398
g4648 PPL_05265 E3JQK7F01EFZL8-5 CDS18091 1452 + 0.356061
g4824 PPL_05463 E3JQK7F01EFZL8-5 CDS560483 4560 + 0.391447
g4843 PPL_05482 E3JQK7F01EFZL8-5 CDS613322 2508 + 0.414274
g4867 PPL_05509 E3JQK7F01EFZL8-5 CDS685188 1164 + 0.444158
g4968 PPL_13203 E3JQK7F01EFZL8-5 CDS943181 1224 + 0.433007
g4969 PPL_05610 E3JQK7F01EFZL8-5 CDS947052 1911 + 0.348509
g5123 PPL_05769 E3JQK7F01EFZL8-5 CDS1363288 1104 + 0.377717
g5221 PPL_05873 E3JQK7F02G10GF-5 CDS186784 357 + 0.436975
g5462 PPL_06129 E3JQK7F02GERJ7-5 CDS22897 729 + 0.407407
g5526 PPL_13250 E3JQK7F02GERJ7-5 CDS204683 960 - 0.504167
g5535 PPL_06200 E3JQK7F02GERJ7-5 CDS240865 1083 + 0.418283
g5558 PPL_06224 E3JQK7F02HEVRT-5 CDS43724 1023 + 0.424242
g556 PPL_12708 catalyzes the reaction lipoamide pyruvate S-acetyldihydrolipoamide COsub2sub E1 alpha component of pyruvate dehydrogenase complex which contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1 phdA DPPA0004F08.r1-5_part3 CDS63875 1149 - 0.462141
g5586 PPL_06249 E3JQK7F02HEVRT-5 CDS113708 1500 - 0.41
g5639 PPL_06315 E3JQK7F02HEVRT-5 CDS287463 324 - 0.404321
g5708 PPL_06389 E3JQK7F02HEVRT-5 CDS502567 1359 - 0.446652
g5846 PPL_13281 E3JQK7F02HP6OU-5 CDS167633 1611 - 0.460583
g5923 PPL_06623 ortholog of the H subunit of vacuolar ATP synthase that generates an acidic environment in several intracellular compartments V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes the H subunit is part of the V1 subunitE3JQK7F02HW0LE-5_part2 CDS114184 1326 + 0.377074
g6158 PPL_06885 E3JQK7F02HW0LE-5_part2 CDS749476 420 + 0.488095
g6209 PPL_06940 E3JQK7F02HW0LE-5_part2 CDS871388 1083 + 0.419206
g6342 PPL_07086 catalyzes the reaction isocitrate NADP 2-oxoglutarate CO2 NADPHE3JQK7F02HW0LE-5_part2 CDS1285026 1164 - 0.467354
g6367 PPL_07114 catalyzes the reaction isocitrate NAD 2-oxoglutarate CO2 NADHE3JQK7F02HW0LE-5_part2 CDS1363023 1083 - 0.461681
g6396 PPL_07148 E3JQK7F02HW0LE-5_part2 CDS1443828 1056 - 0.408144
g6466 PPL_07229 catalyzes the reaction aldehyde NAD Hsub2subO an acid NADH HE3JQK7F02HW0LE-5_part2 CDS1640570 1485 + 0.43165
g6538 PPL_07308 catalyzes the reaction isocitrate glyoxylate succinateE3JQK7F02HW0LE-5_part2 CDS1833044 1395 - 0.49534
g6584 PPL_07358 E3JQK7F02HW0LE-5_part2 CDS1973302 1305 - 0.383908
g6870 PPL_07691 EVG8W8Q02J3HU6-3_part1 CDS93658 1236 + 0.438511
g7007 PPL_07830 EVG8W8Q02J3HU6-3_part1 CDS467774 1617 + 0.468151
g7048 PPL_07865 EVG8W8Q02J3HU6-3_part1 CDS583298 723 - 0.372061
g7144 PPL_07962 EVG8W8Q02J3HU6-3_part2 CDS182975 1617 - 0.429808
g7180 PPL_08002 EVG8W8Q02J3HU6-3_part2 CDS285426 615 + 0.476423
g7211 PPL_08044 catalyzes the reaction GTP oxaloacetate GDP phosphoenolpyruvate COsub2sub in gluconeogenesis and the TCA cycleEVG8W8Q02J3HU6-3_part2 CDS373735 1917 + 0.480438
g7236 PPL_08072 EVG8W8Q02J3HU6-3_part3 CDS71440 1692 + 0.503546
g731 PPL_00882 DPPA0061d07.r1-5 CDS90062 1554 + 0.442085
g7327 PPL_08175 similar to plant and fungi NADH dehydrogenases such as S. cerevisiae NDE1 and NDE2 the external mitochondrial NADH dehydrogenases that catalyze the oxidation of cytosolic NADHEVG8W8Q02J3HU6-3_part3 CDS341702 1392 + 0.385057
g7393 PPL_08252 EVG8W8Q02J3HU6-3_part3 CDS521212 2646 - 0.461451
g7407 PPL_08267 EVG8W8Q02J3HU6-3_part3 CDS562488 420 + 0.37381
g7512 PPL_08388 EVG8W8Q02J3HU6-3_part3 CDS839974 1008 + 0.40873
g7523 PPL_08403 EVG8W8Q02J3HU6-3_part3 CDS874483 1503 + 0.405855
g760 PPL_00916 DPPA0061d07.r1-5 CDS170895 1467 + 0.404908
g768 PPL_00925 cytochrome b5 is a membrane bound hemoprotein that functions as an electron carrier for several membrane bound oxygenases contains a single C-terminal transmembrane domainDPPA0061d07.r1-5 CDS202796 372 - 0.376344
g7744 PPL_08649 EVKQ3GG01CS5PZ-3_part1 CDS284659 936 + 0.393162
g7748 PPL_08654 EVKQ3GG01CS5PZ-3_part1 CDS295382 1236 - 0.453883
g7878 PPL_08803 EVKQ3GG01CS5PZ-3_part1 CDS669266 1530 + 0.486928
g7990 PPL_08932 EVKQ3GG01CS5PZ-3_part1 CDS1038742 936 - 0.397436
g8009 PPL_08952 catalyzes the reaction isocitrate NAD 2-oxoglutarate CO2 NADHEVKQ3GG01CS5PZ-3_part1 CDS1105190 1050 - 0.449524
g8047 PPL_08988 there is an identical copy of this gene on chromosome 5 EVKQ3GG01CS5PZ-3_part1 CDS1195733 1677 + 0.426953
g8088 PPL_09031 EVKQ3GG01CS5PZ-3_part1 CDS1299045 1473 + 0.456891
g8157 PPL_13454 EVKQ3GG01CS5PZ-3_part1 CDS1481254 537 + 0.407821
g8172 PPL_09116 EVKQ3GG01CS5PZ-3_part1 CDS1525393 1809 - 0.454947
g8201 PPL_09145 conserved putative quinone oxidoreductase belongs to the broader superfamily of zinc-dependent alcohol dehydrogenasesEVKQ3GG01CS5PZ-3_part1 CDS1606957 957 - 0.45768
g8233 PPL_09181 ortholog of human FA2H S. cerevisiae SCS7 contains a cytochrome b5 heme-binding domain and 4 predicted transmembrane domainsEVKQ3GG01CS5PZ-3_part1 CDS1702004 1071 - 0.419234
g8256 PPL_09205 EVKQ3GG01CS5PZ-3_part1 CDS1770182 516 + 0.439922
g8272 PPL_09225 EVKQ3GG01CS5PZ-3_part1 CDS1818416 837 + 0.369176
g8284 PPL_09239 EVKQ3GG01CS5PZ-3_part1 CDS1859335 2280 - 0.400439
g8324 PPL_09284 very similar to the H. sapiens tumor protein p53-inducible protein 3 (TP53I3) belongs to the broader superfamily of zinc-dependent alcohol dehydrogenasesEVKQ3GG01CS5PZ-3_part2 CDS103978 1005 + 0.430846
g8387 PPL_09352 EVKQ3GG01CS5PZ-3_part2 CDS268619 1449 + 0.485162
g8582 PPL_12210 EVKQ3GG01DOIJB_part1 CDS459154 1521 - 0.412229
g8597 PPL_12227 EVKQ3GG01DOIJB_part1 CDS499468 1875 + 0.4144
g8623 PPL_12255 EVKQ3GG01DOIJB_part1 CDS567409 2661 + 0.488914
g8678 PPL_12313 catalyzes the reaction squalene AH2 O2 (S)-squalene-23-epoxide A H2O catalyzes the first oxygenation step in sterol biosynthesisEVKQ3GG01DOIJB_part1 CDS732085 1620 - 0.467901
g8696 PPL_12334 very conserved protein among bacteria and fungi zinc-binding ADH's are dimeric or tetrameric enzymes that bind two atoms of zinc per subunitEVKQ3GG01DOIJB_part1 CDS781358 966 - 0.457557
g8800 PPL_13496 catalyzes the reaction 3-methyl-2-oxobutanoate lipoamide S-(2-methylpropanoyl)-dihydrolipoamide COsub2sub E1 component of branched-chain keto acid dehydrogenaseEVKQ3GG01DOIJB_part2 CDS225224 1119 + 0.433423
g8932 PPL_12591 EVKQ3GG01DOIJB_part2 CDS630634 1668 - 0.393885
g9158 PPL_09589 EVKQ3GG02I325Y-5_part1 CDS508486 2022 - 0.464392
g9258 PPL_09692 EVKQ3GG02I325Y-5_part1 CDS773636 1077 + 0.489322
g9262 PPL_09697 EVKQ3GG02I325Y-5_part1 CDS787279 1302 - 0.379416
g930 PPL_01095 DPPA0061d07.r1-5 CDS671691 591 - 0.345178
g9307 PPL_09749 EVKQ3GG02I325Y-5_part1 CDS888304 1893 - 0.441627
g9362 PPL_09804 EVKQ3GG02I325Y-5_part1 CDS1104987 1650 + 0.477576
g9387 PPL_09839 EVKQ3GG02I325Y-5_part1 CDS1172141 1044 + 0.453065
g9402 PPL_09856 EVKQ3GG02I325Y-5_part1 CDS1208633 1392 - 0.296695
g9498 PPL_09963 EVKQ3GG02JQM0V-5 CDS760 1611 - 0.437616
g9623 PPL_10104 EWNM59D01C4IL7-5_part1 CDS342653 1860 + 0.386021
g9630 PPL_10112 EWNM59D01C4IL7-5_part1 CDS362669 1149 - 0.426458
g9779 PPL_10286 EWNM59D01C4IL7-5_part1 CDS823594 537 - 0.428305
g9804 PPL_10319 EWNM59D01C4IL7-5_part1 CDS916158 933 + 0.395498
g9822 PPL_10338 EWNM59D01C4IL7-5_part1 CDS953391 1881 - 0.435938
g9886 PPL_10409 EXOLTKG01B86TH-3_part1 CDS81175 1926 - 0.456386
g9891 PPL_10413 EXOLTKG01B86TH-3_part1 CDS94573 1818 + 0.446095
g9897 PPL_10419 EXOLTKG01B86TH-3_part2 CDS2890 864 + 0.466435
g9909 PPL_10433 catalyzes the reaction R)-lactate 2 ferricytochrome c pyruvate 2 ferrocytochrome cEXOLTKG01B86TH-3_part2 CDS44760 1659 + 0.39783
g9919 PPL_10445 conserved protein may catalyze reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acidsEXOLTKG01B86TH-3_part2 CDS67986 1326 - 0.380091
g9944 PPL_10473 EXOLTKG01B86TH-3_part2 CDS141636 816 + 0.465686
g9946 PPL_10475 EXOLTKG01B86TH-3_part2 CDS145101 1050 + 0.526667
g9957 PPL_13581 EXOLTKG01B86TH-3_part2 CDS175705 1572 + 0.423664
odhB PPL_12016 catalyzes the reaction succinyl-CoA enzyme N6-(dihydrolipoyl)lysine CoA enzyme N6-(S-succinyldihydrolipoyl) lysine E2 component of the multienzyme 2-oxoglutarate dehydrogenase complexPN500-G-d-72b01.r1-5 CDS759023 1335 - 0.47191
vatE PPL_01475 ortholog of the E subunit of vacuolar ATP synthase that generates an acidic environment in several intracellular compartments V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes the E subunit is part of the V1 subunitDPPA0090b03.f1-3_x_part2 CDS243414 666 - 0.453453