TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-19 15:00:34

Gene list

Applied filters:

COG category: RNA processing and modification
Organism: Polysphondylium pallidum, PN500

Number of genes found: 37

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Polysphondylium pallidum, PN500
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
g10191 PPL_10728 EXOLTKG01B86TH-3_part2 CDS925365 3426 + 0.3885
g10431 PPL_13621 EXOLTKG02GJRTE-5 CDS101237 864 + 0.333333
g10461 PPL_11028 EXOLTKG02GJRTE-5 CDS199471 684 + 0.355263
g10956 PPL_11702 PN500-G-d-37g01.f1-5 CDS48570 2274 + 0.389622
g11381 PPL_00003 contig_new08661_1.exp-5 CDS3898 1029 + 0.414966
g2309 PPL_02616 DPPA0090b03.f1-3_y_part1 CDS119904 1314 - 0.405632
g2563 PPL_02883 DPPA0090b03.f1-3_y_part1 CDS779941 426 + 0.401408
g2639 PPL_02974 DPPA0090b03.f1-3_y_part1 CDS997453 1842 - 0.384908
g2705 PPL_12977 DPPA0090b03.f1-3_y_part1 CDS1185976 1056 - 0.382576
g3458 PPL_03919 ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assemblyDPPB0337b12.r1-5 CDS667336 1428 + 0.380252
g3727 PPL_04210 DPPB0360e11.f1-5 CDS71804 2355 + 0.461147
g3730 PPL_04213 DPPB0360e11.f1-5 CDS80891 2688 - 0.354167
g3925 PPL_04436 DPPB0360e11.f1-5 CDS690086 1935 + 0.44186
g4227 PPL_04777 E0KFERV02EE9X2-3_part1 CDS577190 3291 + 0.419933
g4515 PPL_05118 E3JQK7F01CUWUC-3_part1 CDS157133 2103 - 0.450785
g4817 PPL_05455 E3JQK7F01EFZL8-5 CDS533476 1083 - 0.385042
g5029 PPL_05669 E3JQK7F01EFZL8-5 CDS1099115 1542 + 0.385214
g5309 PPL_05958 E3JQK7F02G10GF-5 CDS428407 3099 - 0.500161
g5553 PPL_06218 E3JQK7F02HEVRT-5 CDS26718 4860 - 0.425103
g5557 PPL_06222 E3JQK7F02HEVRT-5 CDS37731 4347 - 0.355648
g5715 PPL_06397 E3JQK7F02HEVRT-5 CDS521376 2220 - 0.429279
g6038 PPL_06763 E3JQK7F02HW0LE-5_part2 CDS424143 6903 - 0.466319
g6321 PPL_07062 E3JQK7F02HW0LE-5_part2 CDS1223471 2112 + 0.393466
g6630 PPL_07415 EVG8W8Q01C9YYY-5_part1 CDS127491 2199 - 0.399272
g6931 PPL_07750 EVG8W8Q02J3HU6-3_part1 CDS245528 3243 + 0.410731
g7065 PPL_07881 EVG8W8Q02J3HU6-3_part1 CDS627600 2412 - 0.385572
g7066 PPL_13379 EVG8W8Q02J3HU6-3_part1 CDS630268 1908 - 0.412998
g7562 PPL_08452 EVG8W8Q02J3HU6-3_part3 CDS995312 3123 + 0.409222
g7627 PPL_08524 EVG8W8Q02J3HU6-3_part3 CDS1181600 1848 - 0.388528
g8389 PPL_09354 subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cellsEVKQ3GG01CS5PZ-3_part2 CDS273826 1587 - 0.326402
g8876 PPL_12522 EVKQ3GG01DOIJB_part2 CDS450538 2955 + 0.379019
g8917 PPL_12567 EVKQ3GG01DOIJB_part2 CDS581996 1911 - 0.403454
g8993 PPL_09416 EVKQ3GG02I325Y-5_part1 CDS24355 2955 + 0.465313
g9376 PPL_09824 EVKQ3GG02I325Y-5_part1 CDS1145981 3276 - 0.392552
g991 PPL_01155 DPPA0061d07.r1-5 CDS839396 2166 + 0.354109
g9918 PPL_10444 EXOLTKG01B86TH-3_part2 CDS65283 2685 + 0.408939
rtc1 PPL_05499 ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNAE3JQK7F01EFZL8-5 CDS656619 1314 - 0.378995