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2024-05-19 15:41:04

Gene list

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COG category: RNA processing and modification
Organism: Dictyostelium discoideum AX4, AX4

Number of genes found: 36

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dictyostelium discoideum AX4, AX4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
DDB_G0272997 DDB_G0272997 DDB0232429 CDS2081848 3345 - 0.23707
DDB_G0279513 DDB_G0279513 DDB0232430 CDS2186381 1854 + 0.28425
DDB_G0284217 DDB_G0284217 similar to H. sapiens CNOT7 and CNOT8 and S. cerevisiae POP2 which are components of the CCR4-NOT transcription complexDDB0232431 CDS1700271 1104 - 0.288043
DDB_G0285269 DDB_G0285269 DDB0232431 CDS3037532 930 + 0.274194
DDB_G0285705 DDB_G0285705 contains a RING-finger that is a specialised type of Zn-finger domain which in some cases has been shown to be involved in ubiquitin E3 ligase activity contains 14 putative transmembrane domainsDDB0232431 CDS3615364 3267 + 0.296602
DDB_G0289199 DDB_G0289199 DDB0232432 CDS2458510 1899 - 0.282254
DDB_G0289461 DDB_G0289461 putative ortholog of H. sapiens CNOT6 and S. cerevisiae CCR4 component of the CCR4-NOT transcription complexDDB0232432 CDS2814027 1722 - 0.260163
DDB_G0289921 DDB_G0289921 DDB0232432 CDS3426110 3708 + 0.263484
DDB_G0291836 DDB_G0291836 DDB0232433 CDS812338 2850 + 0.236842
atxn2 DDB_G0269682 similar to the human ataxin-2 (ATXN2) defects in the gene cause spinocerebellar ataxia 2 (SCA2)DDB0232428 CDS3309660 3312 - 0.352657
bxdc5 DDB_G0285829 ortholog of S. cerevisiae RPF1 and H. sapiens BXDC5 a nucleolar protein involved in the assembly of the large ribosomal subunitDDB0232431 CDS3708077 954 - 0.292453
cdc5l DDB_G0279311 contains two Myb DNA-binding domains ortholog of human CDC5L and yeast CEF1 may play a role in transcriptional activation and in mRNA splicingDDB0232430 CDS1918418 2403 - 0.28506
clp1 DDB_G0285507 ortholog of the conserved CLP1 protein S. cerevisiae CLP1 is involved in both the endonucleolytic cleavage and polyadenylation steps of mRNA 3'-end maturation Mammalian CLP1 is a subunit of cleavage complex IIA which is required for cleavage but not for polyadenylation of pre-mRNADDB0232431 CDS3327387 1380 - 0.322464
cpsf1 DDB_G0281585 ortholog of the human CPSF1 and yeast YTH1 the 160 kDa subunit of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs human CPSF1 involved in the RNA recognition step of the polyadenylation reactionDDB0232430 CDS4665204 4887 - 0.252507
crop DDB_G0278799 DDB0232430 CDS1204493 1083 - 0.304709
cstf3 DDB_G0286645 component of the CSTF complex which in mammalian is required for polyadenylation and 3'-end cleavage of pre-mRNAsDDB0232431 CDS4781245 3198 + 0.329894
dlrA DDB_G0290485 DDB0232432 CDS4410371 2457 - 0.299959
fip1l1 DDB_G0288797 ortholog of yeast FIP1 and mmamalian FIP1L component of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs directly interacts with poly(A) polymeraseDDB0232432 CDS1979163 1683 + 0.343434
imp4 DDB_G0302418 ortholog of the conserved eukaryotic IMP4 component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP3 and MPP10DDB0232430 CDS4835697 861 + 0.297329
mybA DDB_G0293900 DDB0232433 CDS3493719 3693 - 0.25589
mybAA DDB_G0268368 DDB0232428 CDS1003245 2916 + 0.284979
mybQ DDB_G0289319 DDB0232432 CDS2641022 2730 - 0.334066
papA DDB_G0288259 RNA polymerase that specifically incorporates ATP at the 3' end of mRNADDB0232432 CDS1302980 2430 + 0.327572
prp40 DDB_G0283543 ortholog of prp40 which in yeast is a U1 snRNP protein involved in splicingDDB0232431 CDS792074 2046 - 0.280547
prpf8 DDB_G0274229 central component of the U4U6-U5 snRNP complex contains the PRO8NT PROCN PRO C-terminal and Mov34MPNPAD-1 domains found in pre-mRNA splicing factors of the PRO8 familyDDB0232429 CDS4703192 6984 - 0.33362
rcl1 DDB_G0282803 DDB0232430 CDS6124057 1116 - 0.305556
rexo2-1 DDB_G0273355 similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene DDB0232429 CDS2683400 573 + 0.30541
rexo2-2 DDB_G0273741 similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene DDB0232429 CDS3347298 573 - 0.30541
rtc1 DDB_G0276159 ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNADDB0232429 CDS6274208 1302 - 0.320276
sf1 DDB_G0293554 ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assemblyDDB0232433 CDS3035802 1506 + 0.308101
sf3a2 DDB_G0293876 DDB0232433 CDS3412404 648 + 0.274691
sf3a3 DDB_G0270020 subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cellsDDB0232428 CDS4032294 1635 + 0.223242
sf3b1 DDB_G0275957 DDB0232429 CDS6197621 3156 - 0.359949
sf3b2 DDB_G0284555 DDB0232431 CDS2068357 1878 + 0.305112
xrn1 DDB_G0276137 DDB0232429 CDS6232603 5250 - 0.333333
xrn2 DDB_G0269922 DDB0232428 CDS3871046 3573 - 0.285195