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2024-06-02 15:40:27

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: DDB0232431

Number of genes found: 64

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dictyostelium discoideum AX4, AX4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
DDB_G0282961 DDB_G0282961 DDB0232431 CDS57054 1716 - 0.277389
DDB_G0283061 DDB_G0283061 DDB0232431 CDS69391 1032 - 0.293605
DDB_G0283275 DDB_G0283275 similar to bacterial 50S ribosomal L4L1e proteinsDDB0232431 CDS442808 777 + 0.292149
DDB_G0283309 DDB_G0283309 similar to the eIF-2B alphabetadelta subunits familyDDB0232431 CDS511242 1041 - 0.397695
DDB_G0283407 DDB_G0283407 DDB0232431 CDS632298 1368 - 0.214181
DDB_G0283445 DDB_G0283445 DDB0232431 CDS707432 1284 + 0.221184
DDB_G0283773 DDB_G0283773 putative GTPase very conserved in protozoa and fungiDDB0232431 CDS1081883 1305 - 0.288123
DDB_G0283823 DDB_G0283823 DDB0232431 CDS1177277 600 + 0.273333
DDB_G0283861 DDB_G0283861 DDB0232431 CDS1072483 564 + 0.289007
DDB_G0284053 DDB_G0284053 DDB0232431 CDS1473938 714 + 0.268908
DDB_G0284575 DDB_G0284575 DDB0232431 CDS2173651 1815 - 0.344353
DDB_G0284841 DDB_G0284841 DDB0232431 CDS2510140 2640 + 0.273106
DDB_G0285237 DDB_G0285237 DDB0232431 CDS2990906 705 + 0.28227
DDB_G0285377 DDB_G0285377 DDB0232431 CDS3204171 666 - 0.279279
DDB_G0285499 DDB_G0285499 DDB0232431 CDS3314745 5034 + 0.197855
DDB_G0285543 DDB_G0285543 DDB0232431 CDS3362096 2157 + 0.255911
DDB_G0286023 DDB_G0286023 DDB0232431 CDS3954952 264 - 0.32197
DDB_G0286161 DDB_G0286161 DDB0232431 CDS4152139 1269 + 0.291568
DDB_G0286567 DDB_G0286567 DDB0232431 CDS4642679 1848 + 0.237554
DDB_G0286871 DDB_G0286871 DDB0232431 CDS5008976 573 + 0.233857
DDB_G0286929 DDB_G0286929 DDB0232431 CDS5090123 651 + 0.27957
DDB_G0286941 DDB_G0286941 DDB0232431 CDS5119924 2415 + 0.291511
DDB_G0287079 DDB_G0287079 DDB0232431 CDS5302047 1824 + 0.247259
bxdc5 DDB_G0285829 ortholog of S. cerevisiae RPF1 and H. sapiens BXDC5 a nucleolar protein involved in the assembly of the large ribosomal subunitDDB0232431 CDS3708077 954 - 0.292453
cysS DDB_G0287159 catalyzes the reaction ATP L-cysteine tRNACys AMP diphosphate L-cysteinyl-tRNACysDDB0232431 CDS5412959 1983 - 0.328795
ddx10 DDB_G0284017 DDB0232431 CDS1436851 2637 + 0.277209
ddx3 DDB_G0283661 conserved RNA helicase very similar to mammalian DDX3X and DDX3Y and yeast DBP1DDB0232431 CDS939305 2139 - 0.370266
dimt1l DDB_G0283789 essential protein that dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle in S. cerevisiaeDDB0232431 CDS1107655 945 + 0.285714
dph1 DDB_G0284257 ortholog to the conserved DPH1 which in S. cerevisiae is required for synthesis of diphthamide a modified histidine residue of translation elongation factor 2DDB0232431 CDS1781348 1419 - 0.319239
dus2l DDB_G0283877 ortholog of S. cerevisiae SMM1 and the animal DUS2L catalyzes the synthesis of dihydrouridine a modified base found in the D-loop of tRNAsDDB0232431 CDS1134008 1209 + 0.276261
eIF5 DDB_G0286753 EIF5 ortholog the eukaryotic initiation factor 5 catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complexDDB0232431 CDS4930004 1182 + 0.337563
efa1B DDB_G0284035 DDB0232431 CDS1535647 651 + 0.391705
eftud2 DDB_G0283359 highly conserved U5 small nuclear ribonucleoprotein subunit that is similar to elongation factor Tu ortholog of yeast SNU114 and human EFTUD2DDB0232431 CDS569125 3057 - 0.328099
eif2b5 DDB_G0283163 EIF2B5 ortholog the eukaryotic initiation factor 2B epsilon subunit guanyl nucleotide exchange factor for eIF2 defects are linked to leukoencephalopathy with vanishing white matterDDB0232431 CDS349612 2124 - 0.303672
eif5a DDB_G0284861 DDB0232431 CDS2766075 480 + 0.395833
fsjC DDB_G0284945 RrmJFtsJ ribosomal RNA methyltransferase family member well conserved heat shock proteins present in prokaryotes archaea and eukaryotes this is the ortholog of H. sapiens FTSJ3 involved in rRNA processing and 60S ribosomal subunit maturation (yeast)DDB0232431 CDS2672551 2502 - 0.321343
gatA DDB_G0286875 catalyzes the reaction ATP L-glutamyl-tRNA(Gln) L-glutamine ADP phosphate L-glutaminyl-tRNA(Gln) L-glutamateDDB0232431 CDS5011319 1653 + 0.260738
glyS DDB_G0284583 catalyzes the reaction ATP glycine tRNAGly AMP diphosphate glycyl-tRNAGlyDDB0232431 CDS2181616 2037 + 0.354934
hbs1 DDB_G0283769 DDB0232431 CDS1138835 2190 + 0.306393
leuS DDB_G0285451 catalyzes the reaction ATP L-leucine tRNALeu AMP diphosphate L-leucyl-tRNALeuDDB0232431 CDS3240792 3177 + 0.352849
mlysS DDB_G0286517 catalyzes the reaction ATP L-lysine tRNALys AMP diphosphate L-lysyl-tRNALysDDB0232431 CDS4584316 1848 + 0.267316
mmetS DDB_G0285759 catalyzes the reaction ATP L-methionine tRNAMet AMP diphosphate L-methionyl-tRNAMetDDB0232431 CDS3423740 1728 + 0.305556
mrpl15 DDB_G0284405 DDB0232431 CDS1955406 756 + 0.308201
nol5a DDB_G0285679 ortholog of H. sapiens NOL5A and S. cerevisiae SIK1 SIK1 is a component of the box CD snoRNP complex involved in rRNA processingDDB0232431 CDS3582121 1623 + 0.325323
phesA DDB_G0287141 catalyzes the reaction ATP L-phenylalanine tRNAPhe AMP diphosphate L-phenylalanyl-tRNAPhe in S. cerevisiae acts as a tetramer composed of two alpha and two beta subunitsDDB0232431 CDS5374001 1464 + 0.295082
prfA DDB_G0283175 required for the termination of protein biosynthesis class I release factors bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide mediates UAA and UAG-dependent termination in prokaryotesDDB0232431 CDS360952 1293 + 0.329466
proS DDB_G0284197 catalyzes the reaction ATP L-proline tRNAPro AMP diphosphate L-prolyl-tRNAProDDB0232431 CDS1680128 1647 + 0.375228
rpl17 DDB_G0285277 DDB0232431 CDS3049805 543 + 0.412523
rpl18a DDB_G0285881 DDB0232431 CDS3775456 516 + 0.395349
rpl26 DDB_G0283741 DDB0232431 CDS1048980 420 + 0.390476
rpl34 DDB_G0286389 DDB0232431 CDS4400738 369 - 0.365854
rpl37 DDB_G0285971 DDB0232431 CDS3886590 276 + 0.42029
rplP0 DDB_G0286501 DDB0232431 CDS4590677 918 - 0.418301
rplP2 DDB_G0283393 DDB0232431 CDS661727 321 - 0.485981
rps10 DDB_G0286117 protein component of the small (40S) ribosomal subunit highly expressed in vegetative cells and in early developmentDDB0232431 CDS4072416 465 - 0.415054
rps12 DDB_G0284237 protein component of the small (40S) ribosomal subunit ribosomal protein S12 homologDDB0232431 CDS1729814 411 - 0.413625
rps13 DDB_G0284533 protein component of the small (40S) ribosomal subunit ribosomal protein S13 homologDDB0232431 CDS2127182 456 - 0.388158
rps15 DDB_G0285561 protein component of the small (40S) ribosomal subunit ribosomal protein S15 homologDDB0232431 CDS3385002 435 + 0.402299
rps16 DDB_G0284093 protein component of the small (40S) ribosomal subunit ribosomal protein S16 homologDDB0232431 CDS1558362 444 + 0.387387
rps28 DDB_G0285597 protein component of the small (40S) ribosomal subunit ribosomal protein S28 homologDDB0232431 CDS3428530 219 - 0.429224
rps5 DDB_G0286075 DDB0232431 CDS4031568 573 + 0.418848
tfb1m DDB_G0286199 DDB0232431 CDS4166229 1458 - 0.268176
tsfm DDB_G0286399 DDB0232431 CDS4409316 1068 + 0.305243
tsnax DDB_G0284837 ortholog of human TSNAX interacts with translin (TSN) may be involved in RNA metabolismDDB0232431 CDS2473632 855 - 0.247953