TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-04-20 03:17:02

Gene list

Applied filters:

COG category: RNA processing and modification

Number of genes found: 149

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dictyostelium discoideum AX4, AX4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
DDB_G0272997 DDB_G0272997 DDB0232429 CDS2081848 3345 - 0.23707
DDB_G0279513 DDB_G0279513 DDB0232430 CDS2186381 1854 + 0.28425
DDB_G0284217 DDB_G0284217 similar to H. sapiens CNOT7 and CNOT8 and S. cerevisiae POP2 which are components of the CCR4-NOT transcription complexDDB0232431 CDS1700271 1104 - 0.288043
DDB_G0285269 DDB_G0285269 DDB0232431 CDS3037532 930 + 0.274194
DDB_G0285705 DDB_G0285705 contains a RING-finger that is a specialised type of Zn-finger domain which in some cases has been shown to be involved in ubiquitin E3 ligase activity contains 14 putative transmembrane domainsDDB0232431 CDS3615364 3267 + 0.296602
DDB_G0289199 DDB_G0289199 DDB0232432 CDS2458510 1899 - 0.282254
DDB_G0289461 DDB_G0289461 putative ortholog of H. sapiens CNOT6 and S. cerevisiae CCR4 component of the CCR4-NOT transcription complexDDB0232432 CDS2814027 1722 - 0.260163
DDB_G0289921 DDB_G0289921 DDB0232432 CDS3426110 3708 + 0.263484
DDB_G0291836 DDB_G0291836 DDB0232433 CDS812338 2850 + 0.236842
atxn2 DDB_G0269682 similar to the human ataxin-2 (ATXN2) defects in the gene cause spinocerebellar ataxia 2 (SCA2)DDB0232428 CDS3309660 3312 - 0.352657
bxdc5 DDB_G0285829 ortholog of S. cerevisiae RPF1 and H. sapiens BXDC5 a nucleolar protein involved in the assembly of the large ribosomal subunitDDB0232431 CDS3708077 954 - 0.292453
cdc5l DDB_G0279311 contains two Myb DNA-binding domains ortholog of human CDC5L and yeast CEF1 may play a role in transcriptional activation and in mRNA splicingDDB0232430 CDS1918418 2403 - 0.28506
clp1 DDB_G0285507 ortholog of the conserved CLP1 protein S. cerevisiae CLP1 is involved in both the endonucleolytic cleavage and polyadenylation steps of mRNA 3'-end maturation Mammalian CLP1 is a subunit of cleavage complex IIA which is required for cleavage but not for polyadenylation of pre-mRNADDB0232431 CDS3327387 1380 - 0.322464
cpsf1 DDB_G0281585 ortholog of the human CPSF1 and yeast YTH1 the 160 kDa subunit of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs human CPSF1 involved in the RNA recognition step of the polyadenylation reactionDDB0232430 CDS4665204 4887 - 0.252507
crop DDB_G0278799 DDB0232430 CDS1204493 1083 - 0.304709
cstf3 DDB_G0286645 component of the CSTF complex which in mammalian is required for polyadenylation and 3'-end cleavage of pre-mRNAsDDB0232431 CDS4781245 3198 + 0.329894
dlrA DDB_G0290485 DDB0232432 CDS4410371 2457 - 0.299959
fip1l1 DDB_G0288797 ortholog of yeast FIP1 and mmamalian FIP1L component of the cleavage and polyadenylation specificity factor (CPSF) complex required for 3' processing of mRNAs directly interacts with poly(A) polymeraseDDB0232432 CDS1979163 1683 + 0.343434
imp4 DDB_G0302418 ortholog of the conserved eukaryotic IMP4 component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP) required for pre-18S rRNA processing forms a heterotrimeric complex containing IMP3 and MPP10DDB0232430 CDS4835697 861 + 0.297329
mybA DDB_G0293900 DDB0232433 CDS3493719 3693 - 0.25589
mybAA DDB_G0268368 DDB0232428 CDS1003245 2916 + 0.284979
mybQ DDB_G0289319 DDB0232432 CDS2641022 2730 - 0.334066
papA DDB_G0288259 RNA polymerase that specifically incorporates ATP at the 3' end of mRNADDB0232432 CDS1302980 2430 + 0.327572
prp40 DDB_G0283543 ortholog of prp40 which in yeast is a U1 snRNP protein involved in splicingDDB0232431 CDS792074 2046 - 0.280547
prpf8 DDB_G0274229 central component of the U4U6-U5 snRNP complex contains the PRO8NT PROCN PRO C-terminal and Mov34MPNPAD-1 domains found in pre-mRNA splicing factors of the PRO8 familyDDB0232429 CDS4703192 6984 - 0.33362
rcl1 DDB_G0282803 DDB0232430 CDS6124057 1116 - 0.305556
rexo2-1 DDB_G0273355 similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene DDB0232429 CDS2683400 573 + 0.30541
rexo2-2 DDB_G0273741 similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene DDB0232429 CDS3347298 573 - 0.30541
rtc1 DDB_G0276159 ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNADDB0232429 CDS6274208 1302 - 0.320276
sf1 DDB_G0293554 ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assemblyDDB0232433 CDS3035802 1506 + 0.308101
sf3a2 DDB_G0293876 DDB0232433 CDS3412404 648 + 0.274691
sf3a3 DDB_G0270020 subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cellsDDB0232428 CDS4032294 1635 + 0.223242
sf3b1 DDB_G0275957 DDB0232429 CDS6197621 3156 - 0.359949
sf3b2 DDB_G0284555 DDB0232431 CDS2068357 1878 + 0.305112
xrn1 DDB_G0276137 DDB0232429 CDS6232603 5250 - 0.333333
xrn2 DDB_G0269922 DDB0232428 CDS3871046 3573 - 0.285195
 
Dictyostelium fasciculatum, SH3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
g1038 DFA_12499 Dfasci-F-a-25c12.r2-5 CDS1784147 1104 - 0.326993
g10619 DFA_11037 EUAJFUG02HR96I-5 CDS43975 5388 + 0.327023
g11321 DFA_11745 EUAJFUG02HR96I-5 CDS1892339 4827 - 0.469857
g11393 DFA_11830 EUAJFUG02HR96I-5 CDS2111206 3471 - 0.378853
g1264 DFA_01263 Dfasci-F-a-25c12.r2-5 CDS2341251 1293 + 0.372003
g1656 DFA_01671 Dfasci-F-a-25c12.r2-5 CDS3325304 2673 + 0.436588
g1674 DFA_01687 Dfasci-F-a-25c12.r2-5 CDS3365623 1854 - 0.412621
g1684 DFA_01698 Dfasci-F-a-25c12.r2-5 CDS3387407 1458 - 0.382716
g1756 DFA_12550 Dfasci-F-a-25c12.r2-5 CDS3591033 843 - 0.361803
g2110 DFA_02161 Dfasci-G-b-126g04.f1-5 CDS374945 2310 + 0.382684
g2194 DFA_02244 Dfasci-G-b-143d02.r1-5 CDS76688 3084 + 0.429637
g22 DFA_00019 Dfasci-F-a-11f03.f1-5 CDS43152 828 + 0.350242
g2559 DFA_02618 Dfasci-G-b-190b03.r1-5 CDS324145 858 + 0.351981
g2613 DFA_02670 Dfasci-G-b-190b03.r1-5 CDS456260 1563 - 0.296225
g2639 DFA_02697 Dfasci-G-b-190b03.r1-5 CDS520267 2469 - 0.384366
g3216 DFA_03304 Dfasci-G-b-205a01.r1-3 CDS1519296 447 + 0.431767
g3576 DFA_03692 Dfasci-G-b-285a01.f1-5 CDS44852 3183 - 0.367264
g4009 DFA_04168 Dfasci-G-b-285a01.f1-5 CDS1179895 1794 + 0.331661
g4045 DFA_04210 Dfasci-G-b-285a01.f1-5 CDS1263511 2355 + 0.314225
g5464 DFA_12844 Dfasci-G-o-80e12.f1-5 CDS2209210 2097 + 0.422508
g5858 DFA_06069 Dfasci-G-p-12c09.r1-3 CDS418261 1821 + 0.344316
g6090 DFA_06329 Dfasci-G-p-12c09.r1-3 CDS1050934 2706 + 0.383222
g6797 DFA_07065 ET2XIPL01CNAVH-3 CDS556155 2661 - 0.355881
g7217 DFA_07485 ET2XIPL01CNAVH-3 CDS1662929 945 - 0.366138
g7386 DFA_07649 ET2XIPL01COFD4-5 CDS158420 3750 - 0.388
g7749 DFA_08024 ET2XIPL01COFD4-5 CDS1088420 2691 - 0.330732
g7838 DFA_08117 ET2XIPL01COFD4-5 CDS1292625 7005 - 0.450964
g8714 DFA_09027 EU5ZYIE01BBABR-5 CDS177022 2112 - 0.443655
g8922 DFA_09245 EU5ZYIE01DZOHE-5 CDS254557 999 + 0.348348
g8927 DFA_09249 EU5ZYIE01DZOHE-5 CDS264726 1215 - 0.423868
g9080 DFA_09405 EU5ZYIE01DZOHE-5 CDS651741 1326 - 0.409502
g9281 DFA_09630 EU5ZYIE01EUG8B-5 CDS464771 3231 - 0.419375
g9438 DFA_09793 EU5ZYIE01EUG8B-5 CDS928351 1197 - 0.324144
g946 DFA_00932 Dfasci-F-a-25c12.r2-5 CDS1538629 2805 - 0.322995
g9594 DFA_09953 EU5ZYIE02H8LDV-5 CDS376610 1080 + 0.414815
 
Dictyostelium lacteum
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
g1210 DLA_01330 F4PJNLW01A00V1 CDS1324138 3057 - 0.33366
g2168 DLA_02388 F4PJNLW01DERRH CDS650583 1488 + 0.30578
g2436 DLA_02701 F4PJNLW01EE5MJ CDS528190 2787 - 0.311446
g2562 DLA_02844 F4PJNLW01EE5MJ CDS827942 3414 - 0.345636
g2802 DLA_03103 F4PJNLW02GJ9ZB CDS94819 1356 - 0.309735
g3204 DLA_03551 GAOABQK02FWKR3 CDS14300 1245 - 0.356627
g377 DLA_00419 contig05409_1.exp CDS865945 2151 + 0.355184
g3813 DLA_04230 GAOABQK02G7M1S CDS648885 1185 + 0.314768
g3836 DLA_04254 GAOABQK02G7M1S CDS693478 3450 - 0.325507
g4424 DLA_04891 GAOABQK02GRIAE CDS178690 960 - 0.308333
g446 DLA_00493 contig05409_1.exp CDS1022388 2244 - 0.3418
g4709 DLA_05215 GAOABQK02H81I9 CDS612728 2121 + 0.345592
g483 DLA_00535 similar to H. sapiens REXO2 and S. cerevisiae REX2 a mitochondrial 3'-5' RNA exonuclease there is a second copy of this gene contig05409_1.exp CDS1109180 636 + 0.311321
g4922 DLA_05449 GAOABQK02HUB3S CDS230833 921 - 0.295331
g5005 DLA_05543 GAOABQK02HUB3S CDS407066 858 + 0.322844
g5059 DLA_05599 GAOABQK02HUB3S CDS526810 1863 - 0.3489
g5107 DLA_05656 GAOABQK02HUB3S CDS645929 2625 - 0.374857
g5197 DLA_05769 GAOABQK02HUB3S CDS908585 4353 - 0.33655
g5401 DLA_06010 GAOABQK02HUB3S CDS1392391 1083 - 0.347184
g569 DLA_00627 contig05409_1.exp CDS1302253 3717 + 0.334409
g6073 DLA_06760 GAOABQK02IBA3P CDS1107703 3453 + 0.312192
g6279 DLA_06993 GAOABQK02IO52T CDS413957 3456 - 0.303241
g6563 DLA_07314 GAOABQK02JOCCH CDS147275 1806 + 0.343854
g6756 DLA_07524 GAOABQK02JOCCH CDS588961 2115 - 0.336643
g7211 DLA_08046 GLQOFTK02FH5TG CDS728467 2109 - 0.348032
g7376 DLA_08247 GLQOFTK02FH5TG CDS1107166 4839 + 0.356892
g7593 DLA_08495 GLQOFTK02G2F2O CDS66544 1296 + 0.358796
g7631 DLA_08534 central component of the U4U6-U5 snRNP complex contains the PRO8NT PROCN PRO C-terminal and Mov34MPNPAD-1 domains found in pre-mRNA splicing factors of the PRO8 familyGLQOFTK02G2F2O CDS149914 6996 + 0.384791
g824 DLA_00904 F4PJNLW01A00V1 CDS396372 1326 + 0.340875
g8329 DLA_09295 GLQOFTK02G2F2O CDS1733326 516 - 0.364341
g8410 DLA_09379 GLQOFTK02G2F2O CDS1873560 3123 + 0.365354
g8542 DLA_09523 GLQOFTK02GHM7A CDS125680 1917 + 0.340115
g8633 DLA_09626 GLQOFTK02GHM7A CDS349150 3288 - 0.327251
g8974 DLA_09996 GLQOFTK02GQ36N CDS255511 1887 + 0.329094
g9222 DLA_10273 GLQOFTK02GUKFG CDS158477 1419 + 0.309373
g9253 DLA_10308 subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cellsGLQOFTK02GUKFG CDS225464 1443 - 0.306306
g9327 DLA_10395 GLQOFTK02GUKFG CDS404946 1500 - 0.340667
g9478 DLA_10564 GLQOFTK02IIOHN CDS163137 2754 + 0.316993
g9480 DLA_10567 GLQOFTK02IJPNF CDS2 2065 - 0.232446
g9520 DLA_10612 GLQOFTK02IJPNF CDS91656 2298 - 0.336815
g9959 DLA_11108 GLQOFTK02JL55Q CDS519959 1137 - 0.333333
 
Polysphondylium pallidum, PN500
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
g10191 PPL_10728 EXOLTKG01B86TH-3_part2 CDS925365 3426 + 0.3885
g10431 PPL_13621 EXOLTKG02GJRTE-5 CDS101237 864 + 0.333333
g10461 PPL_11028 EXOLTKG02GJRTE-5 CDS199471 684 + 0.355263
g10956 PPL_11702 PN500-G-d-37g01.f1-5 CDS48570 2274 + 0.389622
g11381 PPL_00003 contig_new08661_1.exp-5 CDS3898 1029 + 0.414966
g2309 PPL_02616 DPPA0090b03.f1-3_y_part1 CDS119904 1314 - 0.405632
g2563 PPL_02883 DPPA0090b03.f1-3_y_part1 CDS779941 426 + 0.401408
g2639 PPL_02974 DPPA0090b03.f1-3_y_part1 CDS997453 1842 - 0.384908
g2705 PPL_12977 DPPA0090b03.f1-3_y_part1 CDS1185976 1056 - 0.382576
g3458 PPL_03919 ortholog of the conserved splicing factor 1 binds to the intron branch point sequence (BPS) of the pre-mRNA necessary for the ATP-dependent first step of spliceosome assemblyDPPB0337b12.r1-5 CDS667336 1428 + 0.380252
g3727 PPL_04210 DPPB0360e11.f1-5 CDS71804 2355 + 0.461147
g3730 PPL_04213 DPPB0360e11.f1-5 CDS80891 2688 - 0.354167
g3925 PPL_04436 DPPB0360e11.f1-5 CDS690086 1935 + 0.44186
g4227 PPL_04777 E0KFERV02EE9X2-3_part1 CDS577190 3291 + 0.419933
g4515 PPL_05118 E3JQK7F01CUWUC-3_part1 CDS157133 2103 - 0.450785
g4817 PPL_05455 E3JQK7F01EFZL8-5 CDS533476 1083 - 0.385042
g5029 PPL_05669 E3JQK7F01EFZL8-5 CDS1099115 1542 + 0.385214
g5309 PPL_05958 E3JQK7F02G10GF-5 CDS428407 3099 - 0.500161
g5553 PPL_06218 E3JQK7F02HEVRT-5 CDS26718 4860 - 0.425103
g5557 PPL_06222 E3JQK7F02HEVRT-5 CDS37731 4347 - 0.355648
g5715 PPL_06397 E3JQK7F02HEVRT-5 CDS521376 2220 - 0.429279
g6038 PPL_06763 E3JQK7F02HW0LE-5_part2 CDS424143 6903 - 0.466319
g6321 PPL_07062 E3JQK7F02HW0LE-5_part2 CDS1223471 2112 + 0.393466
g6630 PPL_07415 EVG8W8Q01C9YYY-5_part1 CDS127491 2199 - 0.399272
g6931 PPL_07750 EVG8W8Q02J3HU6-3_part1 CDS245528 3243 + 0.410731
g7065 PPL_07881 EVG8W8Q02J3HU6-3_part1 CDS627600 2412 - 0.385572
g7066 PPL_13379 EVG8W8Q02J3HU6-3_part1 CDS630268 1908 - 0.412998
g7562 PPL_08452 EVG8W8Q02J3HU6-3_part3 CDS995312 3123 + 0.409222
g7627 PPL_08524 EVG8W8Q02J3HU6-3_part3 CDS1181600 1848 - 0.388528
g8389 PPL_09354 subunit of the splicing factor SF3A required for spliceosome assembly contains PRP9 domain characteristic of splicing factor 3A subunit 3 expressed in pstO cellsEVKQ3GG01CS5PZ-3_part2 CDS273826 1587 - 0.326402
g8876 PPL_12522 EVKQ3GG01DOIJB_part2 CDS450538 2955 + 0.379019
g8917 PPL_12567 EVKQ3GG01DOIJB_part2 CDS581996 1911 - 0.403454
g8993 PPL_09416 EVKQ3GG02I325Y-5_part1 CDS24355 2955 + 0.465313
g9376 PPL_09824 EVKQ3GG02I325Y-5_part1 CDS1145981 3276 - 0.392552
g991 PPL_01155 DPPA0061d07.r1-5 CDS839396 2166 + 0.354109
g9918 PPL_10444 EXOLTKG01B86TH-3_part2 CDS65283 2685 + 0.408939
rtc1 PPL_05499 ortholog of RTC1 which catalyzes the conversion of 3'-phosphate to a 2'3'-cyclic phosphodiester at the end of RNAE3JQK7F01EFZL8-5 CDS656619 1314 - 0.378995